Wall clock time and date at job start Mon Mar 30 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30564 * 1 3 3 Si 1.86794 * 120.00046 * 2 1 4 4 H 1.48505 * 109.47213 * 240.00219 * 3 2 1 5 5 H 1.48495 * 109.47487 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47127 * 120.00183 * 3 2 1 7 7 C 1.40298 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.41148 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.39947 * 120.36193 * 180.02562 * 9 7 2 11 11 C 1.41019 * 118.24334 * 180.29494 * 10 9 7 12 12 O 1.21954 * 120.61735 * 179.71770 * 11 10 9 13 13 N 1.34913 * 118.76803 * 359.44570 * 11 10 9 14 14 O 1.41601 * 119.72374 * 180.27453 * 13 11 10 15 15 C 1.35614 * 120.55249 * 0.56164 * 13 11 10 16 16 N 1.30133 * 121.94092 * 359.71090 * 15 13 11 17 17 H 0.97004 * 120.00316 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.87530 * 0.02562 * 10 9 7 19 19 H 0.96693 * 113.99767 * 180.29204 * 14 13 11 20 20 H 1.08002 * 119.03034 * 179.72850 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 3.0934 1.6964 -1.2126 5 1 1.2747 2.7464 -0.0006 6 1 3.0934 1.6963 1.2125 7 6 2.0071 -1.2150 0.0005 8 1 3.0871 -1.2151 0.0001 9 6 1.3013 -2.4374 0.0005 10 6 1.9933 -3.6538 0.0016 11 6 1.2436 -4.8481 -0.0048 12 8 1.8022 -5.9322 -0.0093 13 7 -0.1033 -4.7692 -0.0003 14 8 -0.8760 -5.9558 -0.0007 15 6 -0.7232 -3.5631 -0.0012 16 7 -0.0557 -2.4460 -0.0008 17 1 -0.4851 0.8401 -0.0004 18 1 3.0731 -3.6771 0.0029 19 1 -1.8308 -5.8033 -0.0018 20 1 -1.8027 -3.5286 -0.0019 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233083.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:52 Heat of formation + Delta-G solvation = -25.275056 kcal Electronic energy + Delta-G solvation = -10547.509887 eV Core-core repulsion = 8324.821480 eV Total energy + Delta-G solvation = -2222.688407 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.56736 -38.14825 -37.65014 -35.58798 -32.68864 -31.51163 -28.29446 -25.08890 -23.66602 -20.27254 -19.84225 -18.35675 -17.29967 -16.70870 -16.50837 -15.65222 -15.00675 -14.82652 -14.00268 -13.88452 -13.60802 -13.27689 -12.80590 -12.76371 -12.01552 -11.45746 -10.82451 -10.52385 -10.40257 -9.19574 -8.70058 -6.94532 0.36237 0.97764 1.38488 1.43645 1.56676 1.64944 2.17629 2.60305 3.53772 3.56850 3.79597 4.49900 4.88363 5.08243 5.12171 5.36013 5.87620 6.11822 6.26422 6.50601 6.68126 7.49549 7.55460 8.11167 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.085403 B = 0.012439 C = 0.010899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.777920 B = 2250.380849 C = 2568.313784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.026 3.974 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.256 1.256 6 H -0.258 1.258 7 C -0.405 4.405 8 H 0.099 0.901 9 C 0.248 3.752 10 C -0.500 4.500 11 C 0.517 3.483 12 O -0.647 6.647 13 N -0.416 5.416 14 O -0.338 6.338 15 C 0.325 3.675 16 N -0.481 5.481 17 H 0.299 0.701 18 H 0.106 0.894 19 H 0.412 0.588 20 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 5.532 0.006 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.202 4.202 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.182 1.182 7 C -0.432 4.432 8 H 0.117 0.883 9 C 0.135 3.865 10 C -0.527 4.527 11 C 0.331 3.669 12 O -0.539 6.539 13 N -0.182 5.182 14 O -0.231 6.231 15 C 0.038 3.962 16 N -0.205 5.205 17 H 0.111 0.889 18 H 0.125 0.875 19 H 0.262 0.738 20 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -5.843 5.521 0.006 8.039 hybrid contribution 0.155 -0.462 -0.007 0.488 sum -5.688 5.059 -0.001 7.612 Atomic orbital electron populations 1.69902 1.08893 1.31553 1.23339 1.27210 0.96075 1.04829 0.92050 0.84987 0.78777 0.74184 0.80351 1.18248 1.17947 1.18233 1.20314 0.95873 0.89827 1.37227 0.88292 1.18898 0.87620 0.93119 0.86865 1.21893 0.98607 0.89413 1.42741 1.17296 0.78856 0.90901 0.79836 1.90650 1.69988 1.31972 1.61332 1.48257 1.04597 0.99716 1.65629 1.89350 1.23475 1.11128 1.99154 1.26603 1.02022 0.77539 0.90049 1.69320 1.08746 1.21401 1.21055 0.88894 0.87541 0.73758 0.73669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -31.80 11.48 21.88 0.25 -31.55 14 2 C 0.03 1.13 5.50 85.38 0.47 1.60 14 3 Si 1.00 32.30 29.56 68.60 2.03 34.33 14 4 H -0.26 -8.29 7.11 99.48 0.71 -7.58 14 5 H -0.26 -7.53 7.11 99.48 0.71 -6.82 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 7 C -0.40 -20.26 9.16 23.49 0.22 -20.04 14 8 H 0.10 4.73 7.85 -2.91 -0.02 4.71 14 9 C 0.25 13.24 6.58 39.67 0.26 13.50 14 10 C -0.50 -28.46 9.90 23.37 0.23 -28.23 14 11 C 0.52 29.44 7.60 84.90 0.65 30.08 14 12 O -0.65 -41.32 17.55 11.90 0.21 -41.12 14 13 N -0.42 -18.65 3.79 -322.68 -1.22 -19.87 14 14 O -0.34 -12.21 14.59 -21.73 -0.32 -12.53 14 15 C 0.32 12.44 11.74 180.19 2.12 14.56 14 16 N -0.48 -22.83 7.98 -191.71 -1.53 -24.36 14 17 H 0.30 11.49 8.29 -92.71 -0.77 10.72 14 18 H 0.11 6.15 8.06 -2.91 -0.02 6.13 14 19 H 0.41 7.56 8.77 -74.06 -0.65 6.91 14 20 H 0.25 5.63 7.94 -2.91 -0.02 5.61 14 Total: -1.00 -75.53 197.66 3.99 -71.54 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.63 Total: 12.09 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 3.94 Total: 11.47 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.50 Total: -75.78 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.64 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 2.03 Total: 34.33 kcal Total: -75.53 3.99 -71.54 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233083.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.264 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds