Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99814 * 2 1 4 4 H 1.08004 * 119.99756 * 200.37017 * 3 2 1 5 5 C 1.38808 * 120.00268 * 20.36501 * 3 2 1 6 6 N 1.31618 * 119.99863 * 14.98867 * 5 3 2 7 7 Si 1.86802 * 120.00166 * 194.98565 * 5 3 2 8 8 H 1.48500 * 109.47243 * 85.00354 * 7 5 3 9 9 H 1.48502 * 109.47244 * 205.00735 * 7 5 3 10 10 H 1.48507 * 109.46857 * 325.00328 * 7 5 3 11 11 C 1.46500 * 119.99873 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47105 * 269.99593 * 11 2 1 13 13 C 1.31001 * 119.99628 * 124.99896 * 12 11 2 14 14 C 1.51410 * 136.31848 * 359.63762 * 13 12 11 15 15 C 1.53678 * 87.40618 * 206.25835 * 14 13 12 16 16 C 1.51403 * 136.31506 * 179.97438 * 13 12 11 17 17 H 1.09001 * 109.46984 * 275.09450 * 1 2 3 18 18 H 1.09000 * 109.47295 * 35.09349 * 1 2 3 19 19 H 1.08997 * 109.47478 * 155.09401 * 1 2 3 20 20 H 0.97002 * 119.99603 * 179.97438 * 6 5 3 21 21 H 1.09004 * 109.46645 * 150.00042 * 11 2 1 22 22 H 1.09001 * 109.47155 * 30.00322 * 11 2 1 23 23 H 1.07996 * 120.00234 * 305.00522 * 12 11 2 24 24 H 1.09000 * 113.55647 * 320.88563 * 14 13 12 25 25 H 1.08995 * 113.56492 * 91.62382 * 14 13 12 26 26 H 1.09005 * 113.81832 * 220.14650 * 15 14 13 27 27 H 1.09000 * 113.82697 * 88.57039 * 15 14 13 28 28 H 1.09004 * 113.56261 * 268.37739 * 16 13 12 29 29 H 1.08999 * 113.55975 * 39.10494 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5207 2.3505 0.4183 6 7 0.3876 2.2835 1.0846 7 14 2.2825 4.0127 0.0357 8 1 1.8682 4.4461 -1.3229 9 1 1.8224 5.0099 1.0353 10 1 3.7625 3.9033 0.0907 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 2.0598 -2.8896 1.8202 14 6 1.3483 -4.0749 1.2026 15 6 0.8685 -4.4352 2.6173 16 6 2.1157 -3.6832 3.1083 17 1 -0.3633 0.0913 1.0236 18 1 -0.3634 0.8408 -0.5908 19 1 -0.3634 -0.9320 -0.4328 20 1 -0.0517 3.0974 1.3773 21 1 3.1499 -1.1381 -0.5144 22 1 1.6084 -2.0281 -0.5148 23 1 2.9493 -1.0395 2.1083 24 1 0.5404 -3.7943 0.5268 25 1 2.0247 -4.8125 0.7708 26 1 0.8871 -5.5042 2.8295 27 1 -0.0715 -3.9600 2.8979 28 1 3.0001 -4.3147 3.1930 29 1 1.9387 -3.0807 3.9993 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306243806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = 58.293900 kcal Electronic energy + Delta-G solvation = -10767.089098 eV Core-core repulsion = 8885.116613 eV Total energy + Delta-G solvation = -1881.972485 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.27515 -35.51375 -31.88986 -29.72624 -25.92844 -25.57743 -24.78253 -21.87743 -20.47118 -17.21191 -16.55215 -15.06669 -14.86940 -14.61180 -13.53275 -13.52429 -12.67562 -12.10544 -11.90367 -11.63417 -11.09228 -10.88866 -10.80196 -10.60824 -10.43661 -10.37316 -9.96943 -9.77524 -9.58326 -8.50570 -8.11122 -6.74212 -5.68295 -3.11307 2.92610 3.41691 3.47427 3.48698 4.55480 4.95381 5.09511 5.17048 5.45043 5.49884 5.76164 5.87084 5.94113 6.12586 6.14793 6.24806 6.29858 6.56254 6.68950 6.79138 6.88929 7.28943 7.42588 7.69287 7.79035 7.85335 8.43716 9.27887 9.91977 10.40754 11.36899 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.073480 B = 0.009610 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.965912 B = 2912.920806 C = 2954.559408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.599 5.599 3 C -0.254 4.254 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.177 3.823 12 C -0.109 4.109 13 C -0.199 4.199 14 C -0.099 4.099 15 C -0.137 4.137 16 C -0.102 4.102 17 H 0.028 0.972 18 H 0.043 0.957 19 H -0.003 1.003 20 H 0.252 0.748 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -9.835 0.825 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.321 5.321 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.051 3.949 12 C -0.130 4.130 13 C -0.201 4.201 14 C -0.136 4.136 15 C -0.174 4.174 16 C -0.140 4.140 17 H 0.046 0.954 18 H 0.061 0.939 19 H 0.015 0.985 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.624 -9.678 0.862 9.851 hybrid contribution 0.297 1.035 0.119 1.084 sum 1.922 -8.643 0.981 8.908 Atomic orbital electron populations 1.20775 0.82425 0.95334 0.99384 1.44069 1.01965 1.00527 1.85504 1.19273 0.97129 0.84945 1.36978 0.91179 1.24993 0.97937 0.98401 0.98572 1.70100 1.18886 1.26744 1.39569 0.86261 0.78634 0.83990 0.77599 1.21473 1.21797 1.20546 1.19907 0.95954 0.88246 0.90838 1.23148 0.95753 0.93270 1.00822 1.22267 1.04782 0.95805 0.97240 1.21985 0.99010 0.96298 0.96308 1.22656 0.98128 0.99233 0.97427 1.22048 0.97510 0.97813 0.96579 0.95372 0.93873 0.98473 0.93790 0.92870 0.93810 0.87402 0.91707 0.90284 0.91844 0.90250 0.90318 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.29 9.02 59.85 0.54 4.83 15 2 N -0.60 -15.76 2.91 -182.50 -0.53 -16.29 15 3 C -0.25 -7.17 9.68 -15.06 -0.15 -7.32 15 4 H 0.07 1.92 7.86 -52.48 -0.41 1.51 15 5 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 15 6 N -0.91 -27.21 10.67 55.49 0.59 -26.61 15 7 Si 0.90 22.24 29.58 -169.99 -5.03 17.21 15 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 C 0.18 3.86 6.15 -5.19 -0.03 3.83 15 12 C -0.11 -2.25 9.85 -36.03 -0.35 -2.61 15 13 C -0.20 -3.56 6.88 -100.38 -0.69 -4.25 15 14 C -0.10 -1.49 7.40 -27.40 -0.20 -1.69 15 15 C -0.14 -1.87 8.18 -26.03 -0.21 -2.09 15 16 C -0.10 -1.53 7.95 -27.40 -0.22 -1.74 15 17 H 0.03 0.79 7.40 -51.93 -0.38 0.40 15 18 H 0.04 1.18 7.21 -51.93 -0.37 0.81 15 19 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 15 20 H 0.25 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.05 1.12 8.03 -51.93 -0.42 0.70 15 22 H 0.04 0.88 7.00 -51.93 -0.36 0.52 15 23 H 0.11 2.38 8.06 -52.49 -0.42 1.96 15 24 H 0.06 1.01 7.95 -51.93 -0.41 0.59 15 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 245.01 15.07 3.69 3.69 Total: -1.00 -30.06 245.01 -7.12 -37.19 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.44 Total: -4.03 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.41 Total: -11.15 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.06 Total: -42.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.06 -7.12 -37.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306243806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds