Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99814 * 2 1 4 4 H 1.08004 * 119.99756 * 200.37017 * 3 2 1 5 5 C 1.38808 * 120.00268 * 20.36501 * 3 2 1 6 6 N 1.31618 * 119.99863 * 14.98867 * 5 3 2 7 7 Si 1.86802 * 120.00166 * 194.98565 * 5 3 2 8 8 H 1.48500 * 109.47243 * 85.00354 * 7 5 3 9 9 H 1.48502 * 109.47244 * 205.00735 * 7 5 3 10 10 H 1.48507 * 109.46857 * 325.00328 * 7 5 3 11 11 C 1.46500 * 119.99873 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47105 * 269.99593 * 11 2 1 13 13 C 1.31001 * 119.99628 * 124.99896 * 12 11 2 14 14 C 1.51410 * 136.31848 * 359.63762 * 13 12 11 15 15 C 1.53678 * 87.40618 * 206.25835 * 14 13 12 16 16 C 1.51403 * 136.31506 * 179.97438 * 13 12 11 17 17 H 1.09001 * 109.46984 * 275.09450 * 1 2 3 18 18 H 1.09000 * 109.47295 * 35.09349 * 1 2 3 19 19 H 1.08997 * 109.47478 * 155.09401 * 1 2 3 20 20 H 0.97002 * 119.99603 * 179.97438 * 6 5 3 21 21 H 1.09004 * 109.46645 * 150.00042 * 11 2 1 22 22 H 1.09001 * 109.47155 * 30.00322 * 11 2 1 23 23 H 1.07996 * 120.00234 * 305.00522 * 12 11 2 24 24 H 1.09000 * 113.55647 * 320.88563 * 14 13 12 25 25 H 1.08995 * 113.56492 * 91.62382 * 14 13 12 26 26 H 1.09005 * 113.81832 * 220.14650 * 15 14 13 27 27 H 1.09000 * 113.82697 * 88.57039 * 15 14 13 28 28 H 1.09004 * 113.56261 * 268.37739 * 16 13 12 29 29 H 1.08999 * 113.55975 * 39.10494 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5207 2.3505 0.4183 6 7 0.3876 2.2835 1.0846 7 14 2.2825 4.0127 0.0357 8 1 1.8682 4.4461 -1.3229 9 1 1.8224 5.0099 1.0353 10 1 3.7625 3.9033 0.0907 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 2.0598 -2.8896 1.8202 14 6 1.3483 -4.0749 1.2026 15 6 0.8685 -4.4352 2.6173 16 6 2.1157 -3.6832 3.1083 17 1 -0.3633 0.0913 1.0236 18 1 -0.3634 0.8408 -0.5908 19 1 -0.3634 -0.9320 -0.4328 20 1 -0.0517 3.0974 1.3773 21 1 3.1499 -1.1381 -0.5144 22 1 1.6084 -2.0281 -0.5148 23 1 2.9493 -1.0395 2.1083 24 1 0.5404 -3.7943 0.5268 25 1 2.0247 -4.8125 0.7708 26 1 0.8871 -5.5042 2.8295 27 1 -0.0715 -3.9600 2.8979 28 1 3.0001 -4.3147 3.1930 29 1 1.9387 -3.0807 3.9993 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306243806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = 41.273209 kcal Electronic energy + Delta-G solvation = -10767.827170 eV Core-core repulsion = 8885.116613 eV Total energy + Delta-G solvation = -1882.710558 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.59189 -37.44891 -33.81704 -31.53950 -28.00383 -27.05962 -26.30059 -23.45963 -22.16573 -18.86842 -18.38384 -16.86183 -16.29050 -16.11520 -15.49517 -15.24503 -14.59373 -13.77801 -13.29916 -13.20829 -12.84652 -12.69049 -12.48294 -12.30515 -12.15363 -12.03254 -11.85577 -11.59072 -10.96705 -10.63548 -9.61108 -8.84267 -7.84223 -5.30290 1.40087 1.45918 1.49766 1.56467 2.52056 3.28928 3.64204 3.81084 3.86443 3.94358 4.34657 4.54823 4.67025 4.80035 4.83991 4.85485 4.99051 5.00915 5.06503 5.25643 5.32604 5.51602 5.60858 5.67227 5.71457 6.18967 6.34271 7.13369 7.85716 8.29393 9.20014 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.073480 B = 0.009610 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.965912 B = 2912.920806 C = 2954.559408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.617 5.617 3 C -0.265 4.265 4 H 0.074 0.926 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.972 3.028 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.268 1.268 11 C 0.180 3.820 12 C -0.151 4.151 13 C -0.188 4.188 14 C -0.097 4.097 15 C -0.127 4.127 16 C -0.104 4.104 17 H -0.001 1.001 18 H 0.018 0.982 19 H 0.029 0.971 20 H 0.248 0.752 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -11.585 0.676 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.091 0.909 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.800 3.200 8 H -0.210 1.210 9 H -0.222 1.222 10 H -0.193 1.193 11 C 0.055 3.945 12 C -0.172 4.172 13 C -0.189 4.189 14 C -0.134 4.134 15 C -0.164 4.164 16 C -0.141 4.141 17 H 0.017 0.983 18 H 0.037 0.963 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.204 -11.463 0.706 11.694 hybrid contribution 0.142 1.412 0.193 1.432 sum 2.346 -10.050 0.899 10.360 Atomic orbital electron populations 1.20498 0.82717 0.95827 0.97365 1.44317 1.02204 1.01694 1.85766 1.19625 0.97379 0.86153 1.36315 0.90867 1.25806 0.98657 1.01910 0.98812 1.70275 1.20404 1.27204 1.40987 0.85201 0.78313 0.79337 0.77113 1.20987 1.22170 1.19293 1.19967 0.95822 0.86801 0.91911 1.22698 0.99815 0.94830 0.99812 1.22866 1.00985 0.95379 0.99676 1.22150 0.98955 0.95123 0.97201 1.22628 0.96893 1.01125 0.95784 1.22222 0.99512 0.97626 0.94694 0.98306 0.96334 0.95248 0.94311 0.92637 0.91987 0.90151 0.92172 0.87464 0.88413 0.91063 0.87606 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 9.02 127.77 1.15 10.67 15 2 N -0.62 -32.86 2.91 -731.30 -2.13 -34.99 15 3 C -0.26 -15.16 9.68 84.03 0.81 -14.35 15 4 H 0.07 4.04 7.86 -2.91 -0.02 4.02 15 5 C -0.06 -3.32 5.06 84.86 0.43 -2.89 15 6 N -0.94 -57.95 10.67 21.65 0.23 -57.72 15 7 Si 0.97 46.30 29.58 68.60 2.03 48.33 15 8 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 9 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 11 C 0.18 7.81 6.15 85.63 0.53 8.34 15 12 C -0.15 -6.26 9.85 25.65 0.25 -6.01 15 13 C -0.19 -6.37 6.88 -16.04 -0.11 -6.48 15 14 C -0.10 -2.58 7.40 30.16 0.22 -2.35 15 15 C -0.13 -2.98 8.18 31.05 0.25 -2.73 15 16 C -0.10 -2.78 7.95 30.16 0.24 -2.54 15 17 H 0.00 -0.08 7.40 -2.39 -0.02 -0.10 15 18 H 0.02 1.02 7.21 -2.39 -0.02 1.00 15 19 H 0.03 1.31 7.83 -2.39 -0.02 1.29 15 20 H 0.25 14.75 8.31 -92.71 -0.77 13.98 15 21 H 0.06 2.32 8.03 -2.38 -0.02 2.30 15 22 H 0.06 2.41 7.00 -2.39 -0.02 2.39 15 23 H 0.08 3.70 8.06 -2.91 -0.02 3.68 15 24 H 0.06 1.68 7.95 -2.39 -0.02 1.66 15 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 15 27 H 0.07 1.80 8.14 -2.39 -0.02 1.79 15 28 H 0.11 2.34 8.14 -2.38 -0.02 2.32 15 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 Total: -1.00 -65.14 245.01 5.01 -60.13 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.10 Total: 2.60 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.78 Total: -18.35 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -1.90 Total: -92.70 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -65.14 5.01 -60.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306243806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.399 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds