Wall clock time and date at job start Mon Mar 30 2020 02:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29462 * 118.17275 * 2 1 4 4 C 1.49967 * 124.61165 * 180.89927 * 3 2 1 5 5 H 1.08998 * 109.31320 * 101.07886 * 4 3 2 6 6 C 1.52992 * 109.31493 * 220.69520 * 4 3 2 7 7 C 1.53104 * 110.40462 * 340.98421 * 4 3 2 8 8 N 1.47329 * 107.88349 * 45.46127 * 7 4 3 9 9 C 1.36946 * 121.36407 * 118.19421 * 8 7 4 10 10 H 1.07997 * 119.99862 * 336.01384 * 9 8 7 11 11 C 1.38806 * 119.99863 * 156.01570 * 9 8 7 12 12 N 1.31619 * 120.00435 * 344.49080 * 11 9 8 13 13 Si 1.86802 * 119.99945 * 164.49758 * 11 9 8 14 14 H 1.48504 * 109.47242 * 94.45080 * 13 11 9 15 15 H 1.48503 * 109.47373 * 214.45250 * 13 11 9 16 16 H 1.48505 * 109.46991 * 334.45076 * 13 11 9 17 17 C 1.47006 * 117.26227 * 298.22952 * 8 7 4 18 18 H 1.08993 * 109.47104 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46830 * 120.00306 * 1 2 3 20 20 H 1.09002 * 109.47042 * 240.00081 * 1 2 3 21 21 H 1.07998 * 117.69367 * 0.88123 * 3 2 1 22 22 H 1.09004 * 109.47151 * 60.00670 * 6 4 3 23 23 H 1.09005 * 109.47217 * 180.02562 * 6 4 3 24 24 H 1.08993 * 109.47473 * 300.00038 * 6 4 3 25 25 H 1.09001 * 109.77801 * 165.05345 * 7 4 3 26 26 H 1.08997 * 109.77841 * 285.86517 * 7 4 3 27 27 H 0.97004 * 120.00419 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.51951 * 283.02378 * 17 8 7 29 29 H 1.09000 * 109.52054 * 162.83966 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 -0.0194 5 1 3.9304 1.5538 -1.0316 6 6 4.0014 2.4470 0.9252 7 6 4.2972 0.0179 0.4291 8 7 3.6463 -1.1067 -0.2652 9 6 4.3441 -1.9150 -1.1227 10 1 5.2378 -1.5471 -1.6045 11 6 3.9026 -3.2070 -1.3725 12 7 3.0131 -3.7638 -0.5780 13 14 4.5710 -4.1558 -2.8362 14 1 5.7140 -4.9977 -2.4003 15 1 3.5022 -5.0228 -3.3941 16 1 5.0282 -3.2013 -3.8779 17 6 2.2168 -1.3250 -0.0004 18 1 -0.3633 1.0276 -0.0005 19 1 -0.3633 -0.5139 -0.8900 20 1 -0.3633 -0.5138 0.8900 21 1 1.5123 2.0351 0.0147 22 1 3.6746 2.2083 1.9373 23 1 5.0842 2.5719 0.9127 24 1 3.5258 3.3716 0.5982 25 1 5.3541 0.0525 0.1647 26 1 4.1897 -0.1023 1.5071 27 1 2.7043 -4.6666 -0.7528 28 1 2.0954 -1.8037 0.9713 29 1 1.7959 -1.9635 -0.7771 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306464521.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:43 Heat of formation + Delta-G solvation = 24.467174 kcal Electronic energy + Delta-G solvation = -11148.961339 eV Core-core repulsion = 9265.522017 eV Total energy + Delta-G solvation = -1883.439322 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.86135 -33.58428 -32.79432 -30.51963 -26.33993 -25.81775 -25.30814 -21.56625 -20.44317 -17.26837 -16.10063 -14.89481 -14.44237 -13.83853 -13.41805 -13.29353 -12.61613 -12.15820 -11.91485 -11.88063 -11.30358 -11.04422 -10.85145 -10.77707 -10.56910 -10.24387 -10.08921 -9.76669 -9.43546 -8.55683 -7.80835 -6.67299 -5.74778 -3.13378 3.11131 3.40157 3.46814 3.49751 4.52832 5.39561 5.40020 5.56544 5.70606 5.74956 5.97497 6.13289 6.14745 6.18988 6.30718 6.40764 6.45088 6.58623 6.67171 6.93530 7.03238 7.30145 7.42343 7.56768 7.80433 8.00701 8.43360 9.24705 9.87883 10.46991 11.35489 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.047414 B = 0.014269 C = 0.011912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.395910 B = 1961.817663 C = 2350.036850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.137 4.137 3 C -0.168 4.168 4 C -0.077 4.077 5 H 0.067 0.933 6 C -0.137 4.137 7 C 0.150 3.850 8 N -0.597 5.597 9 C -0.245 4.245 10 H 0.068 0.932 11 C -0.003 4.003 12 N -0.909 5.909 13 Si 0.904 3.096 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.207 3.793 18 H 0.048 0.952 19 H 0.060 0.940 20 H 0.059 0.941 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.023 0.977 27 H 0.253 0.747 28 H 0.035 0.965 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 7.830 1.339 8.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.187 4.187 4 C -0.097 4.097 5 H 0.086 0.914 6 C -0.195 4.195 7 C 0.023 3.977 8 N -0.319 5.319 9 C -0.374 4.374 10 H 0.086 0.914 11 C -0.200 4.200 12 N -0.555 5.555 13 Si 0.734 3.266 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.205 1.205 17 C 0.081 3.919 18 H 0.067 0.933 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.954 7.634 1.308 7.988 hybrid contribution 0.189 -0.501 -0.742 0.915 sum -1.765 7.132 0.566 7.369 Atomic orbital electron populations 1.20859 0.93649 1.00808 1.01704 1.22083 0.95210 0.98226 0.98286 1.21544 0.95459 0.95979 1.05670 1.20434 0.93668 0.96692 0.98916 0.91448 1.21742 1.00388 0.97719 0.99605 1.21007 0.95345 0.86829 0.94523 1.44136 1.04958 1.32049 1.50735 1.19192 1.08539 0.92403 1.17287 0.91423 1.24988 0.99933 0.96036 0.99068 1.70028 1.34624 1.14140 1.36671 0.86248 0.77999 0.79701 0.82665 1.21493 1.21573 1.20502 1.19577 0.82881 0.89190 1.00207 0.93277 0.92068 0.92225 0.90095 0.93107 0.93154 0.93629 0.92719 0.95932 0.93686 0.94754 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.00 36.01 0.36 -1.56 15 2 C -0.14 -2.86 5.92 -100.83 -0.60 -3.46 15 3 C -0.17 -3.28 8.64 -35.95 -0.31 -3.59 15 4 C -0.08 -1.47 3.13 -92.08 -0.29 -1.76 15 5 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 6 C -0.14 -2.07 9.11 37.15 0.34 -1.73 15 7 C 0.15 3.33 5.90 -3.54 -0.02 3.31 15 8 N -0.60 -15.80 3.01 -173.69 -0.52 -16.33 15 9 C -0.24 -6.96 9.71 -15.06 -0.15 -7.11 15 10 H 0.07 1.88 7.88 -52.49 -0.41 1.46 15 11 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 15 12 N -0.91 -26.89 11.08 55.49 0.61 -26.28 15 13 Si 0.90 22.13 29.58 -169.99 -5.03 17.11 15 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 17 C 0.21 5.22 4.94 -5.10 -0.03 5.19 15 18 H 0.05 0.72 7.56 -51.93 -0.39 0.33 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.08 1.40 7.56 -52.49 -0.40 1.00 15 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 25 H 0.05 1.17 7.96 -51.93 -0.41 0.76 15 26 H 0.02 0.50 8.08 -51.93 -0.42 0.08 15 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 15 28 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 29 H 0.09 2.46 6.41 -51.93 -0.33 2.13 15 LS Contribution 238.10 15.07 3.59 3.59 Total: -1.00 -29.85 238.10 -6.59 -36.44 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.46 Total: -3.66 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.78 Total: -10.87 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.09 Total: -42.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.85 -6.59 -36.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306464521.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.903 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds