Wall clock time and date at job start Mon Mar 30 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86794 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47121 * 300.00629 * 3 2 1 6 6 H 1.48498 * 109.46940 * 60.00101 * 3 2 1 7 7 C 1.39162 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 179.97438 * 7 2 1 9 9 N 1.36680 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00069 * 179.97438 * 9 7 2 11 11 O 1.21653 * 119.99992 * 0.02562 * 10 9 7 12 12 C 1.47295 * 120.00220 * 180.27692 * 10 9 7 13 13 C 1.36987 * 126.96095 * 179.43743 * 12 10 9 14 14 C 1.41172 * 103.84109 * 179.87305 * 13 12 10 15 15 N 1.30176 * 106.61282 * 0.39687 * 14 13 12 16 16 O 1.20889 * 112.01023 * 359.73679 * 15 14 13 17 17 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 18 18 H 0.97000 * 120.00194 * 0.02562 * 9 7 2 19 19 H 1.08004 * 128.08136 * 359.97438 * 13 12 10 20 20 H 1.07997 * 126.69643 * 180.13211 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7069 1.3463 0.0006 5 1 1.8881 2.3964 -1.2124 6 1 1.8882 2.3963 1.2125 7 6 2.0087 -1.2052 -0.0005 8 1 3.0887 -1.2052 -0.0010 9 7 1.3253 -2.3889 -0.0005 10 6 1.9992 -3.5561 -0.0016 11 8 3.2157 -3.5561 -0.0021 12 6 1.2628 -4.8317 -0.0077 13 6 1.7990 -6.0922 -0.0203 14 6 0.6698 -6.9396 -0.0181 15 7 -0.3766 -6.1652 -0.0139 16 8 -0.0740 -4.9948 -0.0081 17 1 -0.4850 0.8400 0.0004 18 1 0.3553 -2.3889 -0.0005 19 1 2.8420 -6.3725 -0.0281 20 1 0.6733 -8.0195 -0.0236 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306969647.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:06 Heat of formation + Delta-G solvation = 21.503959 kcal Electronic energy + Delta-G solvation = -10380.395314 eV Core-core repulsion = 8159.735398 eV Total energy + Delta-G solvation = -2220.659917 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.35821 -38.17749 -34.37972 -33.31401 -31.71948 -30.95125 -25.65531 -22.91473 -22.79733 -20.05819 -18.41722 -17.35325 -17.09400 -15.41455 -14.90872 -14.15202 -13.76490 -13.48705 -12.96285 -12.76339 -11.79135 -11.28081 -11.14406 -10.53320 -10.43574 -10.11119 -9.83851 -9.04821 -8.90592 -8.28882 -6.73110 -4.05438 1.50768 2.58232 3.07456 3.14677 3.21630 3.48632 3.98081 4.01914 4.65837 4.72017 5.09437 5.37202 5.71309 5.89734 6.20432 6.41937 7.26592 7.73467 8.25433 8.58301 8.85835 9.20598 9.72223 10.42089 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.090458 B = 0.010680 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.462286 B = 2621.189322 C = 2920.801262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.298 4.298 8 H 0.114 0.886 9 N -0.518 5.518 10 C 0.488 3.512 11 O -0.579 6.579 12 C -0.030 4.030 13 C -0.206 4.206 14 C -0.017 4.017 15 N -0.373 5.373 16 O 0.097 5.903 17 H 0.280 0.720 18 H 0.401 0.599 19 H 0.174 0.826 20 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -5.308 -0.026 5.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.178 4.178 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.428 4.428 8 H 0.132 0.868 9 N -0.151 5.151 10 C 0.274 3.726 11 O -0.466 6.466 12 C -0.097 4.097 13 C -0.230 4.230 14 C -0.195 4.195 15 N -0.078 5.078 16 O 0.031 5.969 17 H 0.090 0.910 18 H 0.235 0.765 19 H 0.191 0.809 20 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.602 -5.339 -0.027 5.372 hybrid contribution 0.583 0.508 -0.001 0.774 sum -0.019 -4.830 -0.027 4.830 Atomic orbital electron populations 1.69588 1.06352 1.29300 1.45799 1.25536 0.95728 1.00510 0.95987 0.85643 0.79843 0.79925 0.78098 1.18706 1.20262 1.20269 1.19973 0.94010 0.81733 1.47124 0.86809 1.41898 1.10021 1.04616 1.58528 1.16101 0.86444 0.80665 0.89432 1.90691 1.11608 1.84975 1.59305 1.25068 0.82588 0.98686 1.03315 1.22736 1.01377 0.90358 1.08508 1.24930 0.88355 1.01974 1.04204 1.73710 1.25272 0.89776 1.19021 1.84961 1.23339 1.21214 1.67422 0.90961 0.76470 0.80888 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.53 13.04 55.51 0.72 -21.80 14 2 C 0.03 0.72 5.50 -17.44 -0.10 0.62 14 3 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 14 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 14 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 14 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 7 C -0.30 -7.95 9.68 -15.05 -0.15 -8.10 14 8 H 0.11 3.12 7.15 -52.49 -0.38 2.75 14 9 N -0.52 -13.16 5.27 -12.01 -0.06 -13.22 14 10 C 0.49 11.99 7.76 -12.58 -0.10 11.89 14 11 O -0.58 -15.75 16.49 5.23 0.09 -15.67 14 12 C -0.03 -0.62 7.29 -36.35 -0.27 -0.89 14 13 C -0.21 -3.63 10.96 -38.92 -0.43 -4.05 14 14 C -0.02 -0.27 12.15 -17.14 -0.21 -0.48 14 15 N -0.37 -6.89 12.04 30.47 0.37 -6.52 14 16 O 0.10 1.96 11.04 15.45 0.17 2.13 14 17 H 0.28 6.72 8.31 -40.82 -0.34 6.38 14 18 H 0.40 9.87 7.72 -40.82 -0.31 9.55 14 19 H 0.17 2.73 8.06 -52.48 -0.42 2.30 14 20 H 0.19 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 201.38 15.07 3.03 3.03 Total: -1.00 -28.86 201.38 -2.61 -31.48 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -0.67 Total: 6.99 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.24 Total: -1.00 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 1.03 Total: -41.55 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.26 Total: -13.54 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -28.86 -2.61 -31.48 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969647.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.981 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds