Wall clock time and date at job start Mon Mar 30 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86798 * 120.00292 * 2 1 4 4 H 1.48497 * 109.47079 * 269.99714 * 3 2 1 5 5 H 1.48501 * 109.46984 * 29.99787 * 3 2 1 6 6 H 1.48506 * 109.47383 * 149.99486 * 3 2 1 7 7 C 1.38763 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00017 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.39598 * 120.16348 * 180.28236 * 10 9 7 12 12 C 1.38556 * 117.90480 * 180.26341 * 11 10 9 13 13 C 1.38831 * 118.05044 * 359.46339 * 12 11 10 14 14 N 1.31881 * 120.03359 * 0.27991 * 13 12 11 15 15 N 1.28354 * 122.28500 * 359.97438 * 14 13 12 16 16 H 0.97006 * 120.00108 * 0.02562 * 1 2 3 17 17 H 1.08001 * 121.05066 * 0.02562 * 11 10 9 18 18 H 1.08002 * 120.97887 * 179.74491 * 12 11 10 19 19 H 1.07998 * 119.98901 * 180.29802 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4975 2.0463 -1.4000 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4401 0.7002 7 6 2.0096 -1.2017 0.0005 8 1 3.0896 -1.2018 0.0010 9 16 1.1286 -2.7277 0.0005 10 6 2.4783 -3.8602 0.0021 11 6 2.2399 -5.2357 -0.0034 12 6 3.3355 -6.0838 0.0037 13 6 4.6018 -5.5145 0.0044 14 7 4.7356 -4.2025 0.0040 15 7 3.7257 -3.4104 0.0024 16 1 -0.4850 0.8401 -0.0004 17 1 1.2331 -5.6265 -0.0091 18 1 3.2083 -7.1563 0.0040 19 1 5.4776 -6.1464 0.0050 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307056736.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:45 Heat of formation + Delta-G solvation = 22.889374 kcal Electronic energy + Delta-G solvation = -8343.664359 eV Core-core repulsion = 6565.817389 eV Total energy + Delta-G solvation = -1777.846969 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 182.021 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.43505 -34.77457 -33.87232 -33.17554 -27.86737 -25.38353 -25.20291 -20.07729 -18.57888 -17.75639 -17.21532 -16.93705 -15.75218 -15.25590 -14.53884 -13.93553 -13.47373 -13.01782 -12.92550 -12.16953 -11.81064 -11.52578 -11.08016 -11.00150 -10.99060 -10.33517 -8.82856 -8.52766 -6.30487 0.08520 0.10857 1.16805 1.37171 1.37903 1.52371 2.12064 2.71612 2.90744 3.00145 3.71427 3.92872 4.02404 4.13385 4.39985 4.95510 5.17347 5.45203 5.51283 6.25386 6.95637 7.95872 8.56425 Molecular weight = 182.02amu Principal moments of inertia in cm(-1) A = 0.074124 B = 0.012750 C = 0.010921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.655226 B = 2195.495473 C = 2563.307662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.562 4.562 8 H 0.090 0.910 9 S 0.073 5.927 10 C 0.023 3.977 11 C -0.130 4.130 12 C -0.084 4.084 13 C -0.001 4.001 14 N -0.281 5.281 15 N -0.303 5.303 16 H 0.279 0.721 17 H 0.170 0.830 18 H 0.202 0.798 19 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -10.162 -0.020 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.710 4.710 8 H 0.108 0.892 9 S 0.318 5.682 10 C -0.232 4.232 11 C -0.165 4.165 12 C -0.114 4.114 13 C -0.173 4.173 14 N -0.122 5.122 15 N -0.151 5.151 16 H 0.089 0.911 17 H 0.188 0.812 18 H 0.219 0.781 19 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.050 -8.747 -0.018 9.263 hybrid contribution 0.662 0.080 -0.004 0.666 sum 3.712 -8.667 -0.022 9.428 Atomic orbital electron populations 1.70020 1.07305 1.29498 1.47086 1.26025 0.96051 1.03025 0.92789 0.85016 0.78168 0.76208 0.79068 1.19057 1.19014 1.19513 1.23503 0.96973 0.91647 1.58877 0.89177 1.83200 1.03442 0.97398 1.84188 1.25760 0.99779 0.99111 0.98503 1.22359 1.03058 0.90808 1.00289 1.22763 0.91353 1.03388 0.93865 1.24785 1.00312 0.93045 0.99163 1.72678 1.24846 1.05699 1.08936 1.73534 0.96465 1.29869 1.15236 0.91120 0.81203 0.78107 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.22 13.22 21.64 0.29 -51.94 13 2 C 0.03 1.52 5.49 84.86 0.47 1.99 13 3 Si 0.99 44.86 29.55 68.60 2.03 46.89 13 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 13 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 13 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 13 7 C -0.56 -33.10 9.26 67.95 0.63 -32.47 13 8 H 0.09 5.51 6.56 -2.91 -0.02 5.49 13 9 S 0.07 3.80 21.66 -56.49 -1.22 2.58 13 10 C 0.02 1.07 7.04 84.90 0.60 1.67 13 11 C -0.13 -4.27 9.97 22.67 0.23 -4.04 13 12 C -0.08 -2.07 10.20 22.49 0.23 -1.84 13 13 C 0.00 -0.03 11.31 84.83 0.96 0.93 13 14 N -0.28 -11.77 11.50 -57.14 -0.66 -12.43 13 15 N -0.30 -15.01 9.64 -54.22 -0.52 -15.54 13 16 H 0.28 14.89 8.31 -92.70 -0.77 14.12 13 17 H 0.17 4.51 8.06 -2.91 -0.02 4.49 13 18 H 0.20 2.52 8.06 -2.91 -0.02 2.49 13 19 H 0.21 3.79 8.06 -2.91 -0.02 3.77 13 Total: -1.00 -71.01 199.21 4.28 -66.73 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: 1.26 Total: -2.53 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.11 Total: -33.77 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -0.89 Total: -79.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.22 Total: 2.58 kcal Total: -71.01 4.28 -66.73 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307056736.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.623 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds