Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50692 * 109.47423 * 239.99744 * 2 1 3 5 5 H 1.08011 * 119.99771 * 240.00271 * 4 2 1 6 6 C 1.37877 * 120.00440 * 60.00095 * 4 2 1 7 7 N 1.31509 * 119.99679 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00172 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47328 * 60.00022 * 8 6 4 10 10 H 1.48501 * 109.47006 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47319 * 299.99788 * 8 6 4 12 12 N 1.46901 * 109.47042 * 119.99370 * 2 1 3 13 13 C 1.48537 * 111.00160 * 298.69646 * 12 2 1 14 14 C 1.54938 * 103.22944 * 200.34988 * 13 12 2 15 15 C 1.54556 * 102.94124 * 37.46198 * 14 13 12 16 16 H 1.08999 * 117.57732 * 118.88910 * 15 14 13 17 17 C 1.52942 * 118.19772 * 274.42519 * 15 14 13 18 18 C 1.47979 * 111.01812 * 181.36335 * 12 2 1 19 19 H 1.09001 * 117.67933 * 5.01929 * 18 12 2 20 20 H 1.09002 * 109.46343 * 54.46773 * 1 2 3 21 21 H 1.09000 * 109.46846 * 174.46186 * 1 2 3 22 22 H 1.08992 * 109.47196 * 294.46804 * 1 2 3 23 23 H 0.96999 * 120.00496 * 179.97438 * 7 6 4 24 24 H 1.08999 * 110.66521 * 81.91117 * 13 12 2 25 25 H 1.09003 * 110.66357 * 318.78170 * 13 12 2 26 26 H 1.09008 * 110.71435 * 279.09845 * 14 13 12 27 27 H 1.08991 * 110.87248 * 155.89896 * 14 13 12 28 28 H 1.09004 * 117.45181 * 199.35200 * 17 15 14 29 29 H 1.08993 * 117.45852 * 344.16145 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6995 -0.2395 -2.4827 7 7 0.9430 0.8294 -2.6035 8 14 2.3217 -1.1206 -4.0078 9 1 1.8261 -2.5205 -4.0075 10 1 1.8273 -0.4202 -5.2203 11 1 3.8067 -1.1212 -4.0079 12 7 2.0197 -0.6924 1.1995 13 6 1.5694 -0.0007 2.4345 14 6 2.5651 -0.5076 3.5079 15 6 3.9002 -0.5841 2.7329 16 1 4.7233 0.0387 3.0831 17 6 4.2030 -1.8556 1.9389 18 6 3.4986 -0.6840 1.2507 19 1 4.0286 -0.1207 0.4826 20 1 -0.3632 0.5973 -0.8364 21 1 -0.3633 -1.0229 -0.0992 22 1 -0.3633 0.4256 0.9353 23 1 0.7089 1.1611 -3.4844 24 1 0.5498 -0.2910 2.6879 25 1 1.6453 1.0805 2.3193 26 1 2.2726 -1.4931 3.8705 27 1 2.6387 0.1995 4.3340 28 1 5.2424 -2.0448 1.6704 29 1 3.6066 -2.7405 2.1605 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307257768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = 34.749787 kcal Electronic energy + Delta-G solvation = -11179.968193 eV Core-core repulsion = 9296.974759 eV Total energy + Delta-G solvation = -1882.993434 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.03417 -34.38839 -31.94360 -29.96796 -27.47893 -25.17659 -22.54703 -20.77693 -19.63804 -19.24646 -16.13316 -15.65848 -14.56672 -14.34136 -13.25097 -13.00032 -12.65048 -12.05708 -11.66993 -11.58979 -11.15198 -10.84518 -10.62714 -10.45099 -10.27942 -10.17064 -9.86778 -9.60518 -9.23172 -8.84596 -8.39686 -7.16112 -5.98199 -4.01796 3.34585 3.38465 3.42060 4.22472 4.44557 4.82720 5.29121 5.34301 5.38016 5.67085 5.90628 5.92598 5.97945 6.23737 6.26089 6.35140 6.56756 6.66077 6.73296 6.87924 7.04080 7.07780 7.52909 7.65287 7.88007 8.17403 8.34954 8.58899 9.05369 9.62917 11.09205 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054702 B = 0.013619 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.743272 B = 2055.448501 C = 2432.228344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.205 3.795 3 H 0.000 1.000 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.491 5.491 13 C 0.038 3.962 14 C -0.091 4.091 15 C -0.205 4.205 16 H 0.101 0.899 17 C -0.150 4.150 18 C 0.033 3.967 19 H 0.110 0.890 20 H 0.082 0.918 21 H 0.035 0.965 22 H 0.007 0.993 23 H 0.260 0.740 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -1.526 7.734 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.099 3.901 3 H 0.018 0.982 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.215 5.215 13 C -0.090 4.090 14 C -0.129 4.129 15 C -0.225 4.225 16 H 0.119 0.881 17 C -0.188 4.188 18 C -0.077 4.077 19 H 0.127 0.873 20 H 0.100 0.900 21 H 0.054 0.946 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.910 -1.915 7.534 8.300 hybrid contribution 0.614 0.427 -0.909 1.177 sum 3.525 -1.488 6.625 7.650 Atomic orbital electron populations 1.21789 0.97530 1.00407 0.99009 1.19389 0.92434 0.92020 0.86265 0.98235 1.21095 1.30909 1.12278 0.89663 0.91949 1.24935 0.95261 0.95097 0.99007 1.69893 1.37034 1.23103 1.23470 0.86573 0.79059 0.79783 0.82051 1.20225 1.21403 1.20370 1.64366 1.04354 1.50211 1.02591 1.23391 0.98587 0.96486 0.90493 1.22047 0.93212 1.00826 0.96850 1.23544 0.99251 1.03235 0.96454 0.88123 1.23033 1.00078 0.92912 1.02807 1.23374 0.90539 1.00765 0.93002 0.87252 0.89957 0.94593 0.97361 0.92981 0.90856 0.94597 0.91488 0.91819 0.89141 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.89 37.16 0.33 -2.91 15 2 C 0.21 5.35 1.84 -68.87 -0.13 5.22 15 3 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 15 4 C -0.50 -14.06 7.94 -34.44 -0.27 -14.33 15 5 H 0.06 1.77 7.49 -52.48 -0.39 1.38 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 15 7 N -0.90 -25.91 11.38 55.43 0.63 -25.28 15 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 N -0.49 -11.10 5.05 -216.01 -1.09 -12.20 15 13 C 0.04 0.73 5.46 -1.90 -0.01 0.72 15 14 C -0.09 -1.46 6.85 -24.89 -0.17 -1.63 15 15 C -0.21 -3.43 7.05 -89.37 -0.63 -4.06 15 16 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 17 C -0.15 -2.57 10.23 -26.73 -0.27 -2.85 15 18 C 0.03 0.67 5.61 -66.62 -0.37 0.30 15 19 H 0.11 2.41 7.75 -51.93 -0.40 2.01 15 20 H 0.08 2.23 6.24 -51.93 -0.32 1.91 15 21 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.01 0.17 6.70 -51.93 -0.35 -0.18 15 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 24 H 0.07 1.34 7.54 -51.93 -0.39 0.95 15 25 H 0.04 0.70 7.98 -51.93 -0.41 0.28 15 26 H 0.07 1.03 8.14 -51.92 -0.42 0.61 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 15 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 15 LS Contribution 235.41 15.07 3.55 3.55 Total: -1.00 -28.86 235.41 -7.92 -36.78 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.36 Total: -1.50 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.62 Total: -18.02 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.46 Total: -37.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.86 -7.92 -36.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307257768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.534 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds