Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50692 * 109.47423 * 239.99744 * 2 1 3 5 5 H 1.08011 * 119.99771 * 240.00271 * 4 2 1 6 6 C 1.37877 * 120.00440 * 60.00095 * 4 2 1 7 7 N 1.31509 * 119.99679 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00172 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47328 * 60.00022 * 8 6 4 10 10 H 1.48501 * 109.47006 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47319 * 299.99788 * 8 6 4 12 12 N 1.46901 * 109.47042 * 119.99370 * 2 1 3 13 13 C 1.48537 * 111.00160 * 298.69646 * 12 2 1 14 14 C 1.54938 * 103.22944 * 200.34988 * 13 12 2 15 15 C 1.54556 * 102.94124 * 37.46198 * 14 13 12 16 16 H 1.08999 * 117.57732 * 118.88910 * 15 14 13 17 17 C 1.52942 * 118.19772 * 274.42519 * 15 14 13 18 18 C 1.47979 * 111.01812 * 181.36335 * 12 2 1 19 19 H 1.09001 * 117.67933 * 5.01929 * 18 12 2 20 20 H 1.09002 * 109.46343 * 54.46773 * 1 2 3 21 21 H 1.09000 * 109.46846 * 174.46186 * 1 2 3 22 22 H 1.08992 * 109.47196 * 294.46804 * 1 2 3 23 23 H 0.96999 * 120.00496 * 179.97438 * 7 6 4 24 24 H 1.08999 * 110.66521 * 81.91117 * 13 12 2 25 25 H 1.09003 * 110.66357 * 318.78170 * 13 12 2 26 26 H 1.09008 * 110.71435 * 279.09845 * 14 13 12 27 27 H 1.08991 * 110.87248 * 155.89896 * 14 13 12 28 28 H 1.09004 * 117.45181 * 199.35200 * 17 15 14 29 29 H 1.08993 * 117.45852 * 344.16145 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6995 -0.2395 -2.4827 7 7 0.9430 0.8294 -2.6035 8 14 2.3217 -1.1206 -4.0078 9 1 1.8261 -2.5205 -4.0075 10 1 1.8273 -0.4202 -5.2203 11 1 3.8067 -1.1212 -4.0079 12 7 2.0197 -0.6924 1.1995 13 6 1.5694 -0.0007 2.4345 14 6 2.5651 -0.5076 3.5079 15 6 3.9002 -0.5841 2.7329 16 1 4.7233 0.0387 3.0831 17 6 4.2030 -1.8556 1.9389 18 6 3.4986 -0.6840 1.2507 19 1 4.0286 -0.1207 0.4826 20 1 -0.3632 0.5973 -0.8364 21 1 -0.3633 -1.0229 -0.0992 22 1 -0.3633 0.4256 0.9353 23 1 0.7089 1.1611 -3.4844 24 1 0.5498 -0.2910 2.6879 25 1 1.6453 1.0805 2.3193 26 1 2.2726 -1.4931 3.8705 27 1 2.6387 0.1995 4.3340 28 1 5.2424 -2.0448 1.6704 29 1 3.6066 -2.7405 2.1605 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307257768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = 16.360679 kcal Electronic energy + Delta-G solvation = -11180.765604 eV Core-core repulsion = 9296.974759 eV Total energy + Delta-G solvation = -1883.790846 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.56824 -36.30142 -33.85100 -31.56948 -29.27356 -27.28268 -24.08195 -22.51689 -21.09832 -20.95228 -18.22507 -17.40470 -16.26533 -16.06082 -15.04204 -14.77645 -14.26239 -13.59986 -13.45688 -13.16237 -12.98534 -12.75740 -12.48592 -12.30261 -12.04940 -11.83904 -11.72614 -11.14126 -10.93571 -10.71316 -10.50002 -8.89715 -8.12934 -6.24294 1.40559 1.42850 1.50708 2.41331 2.79371 3.14168 3.31282 3.88745 3.96948 4.33013 4.44600 4.47625 4.55637 4.78934 4.83489 4.92510 4.98507 5.00508 5.08918 5.14742 5.22741 5.40581 5.49817 5.70561 5.73427 6.21081 6.39002 6.63840 6.89768 7.44645 8.93559 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054702 B = 0.013619 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.743272 B = 2055.448501 C = 2432.228344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.210 3.790 3 H -0.038 1.038 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.502 5.502 13 C 0.031 3.969 14 C -0.083 4.083 15 C -0.177 4.177 16 H 0.126 0.874 17 C -0.133 4.133 18 C -0.018 4.018 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.029 0.971 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.079 0.921 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -2.434 8.909 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H -0.021 1.021 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.226 5.226 13 C -0.097 4.097 14 C -0.121 4.121 15 C -0.196 4.196 16 H 0.143 0.857 17 C -0.171 4.171 18 C -0.127 4.127 19 H 0.099 0.901 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.786 -2.830 8.729 9.927 hybrid contribution 0.357 0.738 -1.226 1.475 sum 4.144 -2.091 7.504 8.823 Atomic orbital electron populations 1.21602 0.97122 0.99563 0.99234 1.19158 0.92721 0.90073 0.87734 1.02053 1.21322 1.31037 1.12182 0.90992 0.92832 1.25743 0.95396 0.95804 1.01966 1.70020 1.37818 1.24223 1.24154 0.85555 0.78699 0.78683 0.78358 1.19696 1.20734 1.19692 1.64338 1.05943 1.49910 1.02363 1.23525 1.00022 0.95858 0.90268 1.22070 0.91398 1.02183 0.96426 1.23739 1.00046 1.02595 0.93232 0.85654 1.23130 1.00739 0.92313 1.00932 1.23333 0.89454 1.04499 0.95435 0.90126 0.92357 0.95211 0.94968 0.92888 0.90232 0.95585 0.90368 0.88605 0.86873 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.89 71.98 0.64 -5.35 15 2 C 0.21 11.28 1.84 44.17 0.08 11.37 15 3 H -0.04 -2.27 8.09 -2.39 -0.02 -2.29 15 4 C -0.52 -29.72 7.94 25.60 0.20 -29.51 15 5 H 0.05 3.10 7.49 -2.90 -0.02 3.08 15 6 C 0.01 0.53 5.30 84.66 0.45 0.98 15 7 N -0.92 -54.53 11.38 21.45 0.24 -54.29 15 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 15 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 12 N -0.50 -22.71 5.05 -837.32 -4.23 -26.94 15 13 C 0.03 1.14 5.46 86.65 0.47 1.61 15 14 C -0.08 -2.37 6.85 31.79 0.22 -2.15 15 15 C -0.18 -5.39 7.05 -9.98 -0.07 -5.46 15 16 H 0.13 3.23 8.14 -2.39 -0.02 3.21 15 17 C -0.13 -4.24 10.23 30.59 0.31 -3.93 15 18 C -0.02 -0.73 5.61 45.03 0.25 -0.48 15 19 H 0.08 3.70 7.75 -2.39 -0.02 3.68 15 20 H 0.06 3.24 6.24 -2.39 -0.01 3.23 15 21 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.03 1.43 6.70 -2.39 -0.02 1.41 15 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 24 H 0.08 2.79 7.54 -2.39 -0.02 2.77 15 25 H 0.03 1.00 7.98 -2.39 -0.02 0.98 15 26 H 0.08 2.10 8.14 -2.38 -0.02 2.08 15 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.11 3.05 8.14 -2.38 -0.02 3.03 15 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 Total: -1.00 -62.73 235.41 1.71 -61.02 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.11 Total: 6.27 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 2.56 Total: -32.93 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.99 Total: -81.23 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.73 1.71 -61.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307257768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.384 kcal (2) G-P(sol) polarization free energy of solvation -62.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds