Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.81498 * 2 1 4 4 C 1.36936 * 119.99572 * 60.52941 * 3 2 1 5 5 H 1.07998 * 120.00235 * 359.97438 * 4 3 2 6 6 C 1.38817 * 119.99613 * 180.02562 * 4 3 2 7 7 N 1.31613 * 120.00188 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99671 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47222 * 90.00306 * 8 6 4 10 10 H 1.48496 * 109.46793 * 209.99607 * 8 6 4 11 11 H 1.48498 * 109.47477 * 329.99654 * 8 6 4 12 12 C 1.53029 * 109.64190 * 120.53073 * 2 1 3 13 13 C 1.50066 * 110.14599 * 169.11631 * 12 2 1 14 14 C 1.29437 * 124.07815 * 342.84625 * 13 12 2 15 15 C 1.50069 * 124.07578 * 0.49435 * 14 13 12 16 16 C 1.53026 * 110.14469 * 342.86404 * 15 14 13 17 17 H 1.09004 * 109.46898 * 299.47130 * 1 2 3 18 18 H 1.08997 * 109.46855 * 59.46779 * 1 2 3 19 19 H 1.08998 * 109.47420 * 179.47229 * 1 2 3 20 20 H 0.96997 * 120.00195 * 240.52598 * 3 2 1 21 21 H 0.96993 * 120.00215 * 180.02562 * 7 6 4 22 22 H 1.09000 * 109.35690 * 48.91075 * 12 2 1 23 23 H 1.08994 * 109.35484 * 289.32887 * 12 2 1 24 24 H 1.07995 * 117.95751 * 162.86924 * 13 12 2 25 25 H 1.08001 * 117.96547 * 180.46742 * 14 13 12 26 26 H 1.08995 * 109.36309 * 103.07261 * 15 14 13 27 27 H 1.09000 * 109.35818 * 222.65916 * 15 14 13 28 28 H 1.09004 * 109.64091 * 169.12448 * 16 15 14 29 29 H 1.08997 * 109.64470 * 289.53889 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0267 1.3783 0.0000 4 6 1.7098 2.2201 1.0325 5 1 1.0935 1.8681 1.8465 6 6 2.1799 3.5262 1.0322 7 7 2.9306 3.9553 0.0399 8 14 1.7483 4.6744 2.4411 9 1 2.7813 4.5659 3.5024 10 1 1.6962 6.0721 1.9422 11 1 0.4244 4.2982 2.9986 12 6 2.0444 -0.7322 1.2414 13 6 3.5212 -0.9723 1.1250 14 6 4.1817 -0.9041 0.0139 15 6 3.5649 -0.5650 -1.3114 16 6 2.0455 -0.7339 -1.2443 17 1 -0.3633 0.5056 0.8947 18 1 -0.3633 0.5221 -0.8852 19 1 -0.3634 -1.0276 -0.0095 20 1 2.5799 1.6944 -0.7313 21 1 3.2594 4.8678 0.0399 22 1 1.5293 -1.6880 1.3365 23 1 1.8453 -0.1273 2.1260 24 1 4.0667 -1.2177 2.0242 25 1 5.2428 -1.1033 0.0425 26 1 3.8027 0.4676 -1.5670 27 1 3.9685 -1.2268 -2.0777 28 1 1.5895 -0.3061 -2.1372 29 1 1.7971 -1.7931 -1.1778 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307475763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 15.447130 kcal Electronic energy + Delta-G solvation = -11316.352921 eV Core-core repulsion = 9432.522460 eV Total energy + Delta-G solvation = -1883.830460 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.50666 -33.66183 -31.69473 -30.16373 -28.69064 -25.81578 -23.72406 -22.38934 -19.55489 -17.26241 -16.58629 -15.32032 -14.37259 -13.91555 -13.59842 -13.07502 -12.56853 -12.34712 -11.73938 -11.51997 -11.29063 -11.22521 -10.91955 -10.79781 -10.52451 -10.16700 -9.64069 -9.56796 -9.24763 -8.79311 -8.21996 -6.83626 -5.67634 -2.93858 3.05921 3.47539 3.52704 3.54094 4.66364 5.37479 5.43923 5.54162 5.67370 5.91246 5.98533 6.06028 6.10414 6.24231 6.35252 6.39128 6.54833 6.59571 6.64640 6.78439 7.01979 7.07133 7.09870 7.46381 7.70072 7.79103 8.51844 9.62821 10.23108 10.58273 11.55768 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.048274 B = 0.014416 C = 0.013693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.880912 B = 1941.876995 C = 2044.307594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 N -0.713 5.713 4 C -0.225 4.225 5 H 0.069 0.931 6 C -0.017 4.017 7 N -0.935 5.935 8 Si 0.901 3.099 9 H -0.292 1.292 10 H -0.293 1.293 11 H -0.283 1.283 12 C -0.098 4.098 13 C -0.130 4.130 14 C -0.159 4.159 15 C -0.083 4.083 16 C -0.115 4.115 17 H 0.054 0.946 18 H 0.049 0.951 19 H 0.036 0.964 20 H 0.384 0.616 21 H 0.253 0.747 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -9.447 -0.767 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.105 3.895 3 N -0.355 5.355 4 C -0.356 4.356 5 H 0.087 0.913 6 C -0.212 4.212 7 N -0.585 5.585 8 Si 0.733 3.267 9 H -0.220 1.220 10 H -0.219 1.219 11 H -0.209 1.209 12 C -0.138 4.138 13 C -0.148 4.148 14 C -0.178 4.178 15 C -0.120 4.120 16 C -0.153 4.153 17 H 0.073 0.927 18 H 0.068 0.932 19 H 0.055 0.945 20 H 0.219 0.781 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.055 -9.350 -0.627 9.430 hybrid contribution 0.124 0.911 0.712 1.163 sum -0.931 -8.439 0.086 8.491 Atomic orbital electron populations 1.22220 0.97875 0.98924 1.01961 1.19605 0.91639 0.86314 0.91912 1.42452 1.60869 1.06063 1.26132 1.19145 1.24983 0.91760 0.99733 0.91311 1.24676 1.00933 0.97416 0.98174 1.69650 1.39860 1.16843 1.32113 0.86264 0.77785 0.80679 0.81959 1.21971 1.21943 1.20912 1.20964 0.92790 0.98748 1.01250 1.21822 0.96670 0.99678 0.96679 1.21758 0.98358 1.02462 0.95185 1.20308 0.95132 1.01630 0.94894 1.21766 0.95484 0.99477 0.98552 0.92730 0.93211 0.94529 0.78107 0.93742 0.92731 0.90849 0.89513 0.89346 0.90367 0.92655 0.92171 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.46 37.16 0.31 -2.52 15 2 C 0.20 3.97 0.76 -131.60 -0.10 3.87 15 3 N -0.71 -17.83 4.62 -47.03 -0.22 -18.04 15 4 C -0.22 -6.20 8.58 -15.06 -0.13 -6.33 15 5 H 0.07 1.86 6.73 -52.49 -0.35 1.50 15 6 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 15 7 N -0.94 -28.56 13.06 55.49 0.72 -27.83 15 8 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 15 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 10 H -0.29 -7.47 7.11 56.52 0.40 -7.07 15 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 12 C -0.10 -1.88 4.89 -28.17 -0.14 -2.02 15 13 C -0.13 -2.43 9.68 -35.90 -0.35 -2.78 15 14 C -0.16 -2.88 9.74 -35.90 -0.35 -3.23 15 15 C -0.08 -1.44 5.67 -28.17 -0.16 -1.60 15 16 C -0.11 -2.00 5.00 -26.52 -0.13 -2.14 15 17 H 0.05 1.09 7.35 -51.93 -0.38 0.71 15 18 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 20 H 0.38 10.28 6.17 -40.82 -0.25 10.02 15 21 H 0.25 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.05 0.91 8.10 -51.93 -0.42 0.49 15 23 H 0.07 1.53 6.98 -51.93 -0.36 1.17 15 24 H 0.09 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.09 1.45 8.06 -52.49 -0.42 1.02 15 26 H 0.08 1.55 6.80 -51.93 -0.35 1.19 15 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 15 LS Contribution 234.08 15.07 3.53 3.53 Total: -1.00 -29.71 234.08 -6.34 -36.05 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.22 Total: 5.90 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.14 Total: -17.32 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.51 Total: -45.88 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.71 -6.34 -36.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307475763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.496 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds