Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.81498 * 2 1 4 4 C 1.36936 * 119.99572 * 60.52941 * 3 2 1 5 5 H 1.07998 * 120.00235 * 359.97438 * 4 3 2 6 6 C 1.38817 * 119.99613 * 180.02562 * 4 3 2 7 7 N 1.31613 * 120.00188 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99671 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47222 * 90.00306 * 8 6 4 10 10 H 1.48496 * 109.46793 * 209.99607 * 8 6 4 11 11 H 1.48498 * 109.47477 * 329.99654 * 8 6 4 12 12 C 1.53029 * 109.64190 * 120.53073 * 2 1 3 13 13 C 1.50066 * 110.14599 * 169.11631 * 12 2 1 14 14 C 1.29437 * 124.07815 * 342.84625 * 13 12 2 15 15 C 1.50069 * 124.07578 * 0.49435 * 14 13 12 16 16 C 1.53026 * 110.14469 * 342.86404 * 15 14 13 17 17 H 1.09004 * 109.46898 * 299.47130 * 1 2 3 18 18 H 1.08997 * 109.46855 * 59.46779 * 1 2 3 19 19 H 1.08998 * 109.47420 * 179.47229 * 1 2 3 20 20 H 0.96997 * 120.00195 * 240.52598 * 3 2 1 21 21 H 0.96993 * 120.00215 * 180.02562 * 7 6 4 22 22 H 1.09000 * 109.35690 * 48.91075 * 12 2 1 23 23 H 1.08994 * 109.35484 * 289.32887 * 12 2 1 24 24 H 1.07995 * 117.95751 * 162.86924 * 13 12 2 25 25 H 1.08001 * 117.96547 * 180.46742 * 14 13 12 26 26 H 1.08995 * 109.36309 * 103.07261 * 15 14 13 27 27 H 1.09000 * 109.35818 * 222.65916 * 15 14 13 28 28 H 1.09004 * 109.64091 * 169.12448 * 16 15 14 29 29 H 1.08997 * 109.64470 * 289.53889 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0267 1.3783 0.0000 4 6 1.7098 2.2201 1.0325 5 1 1.0935 1.8681 1.8465 6 6 2.1799 3.5262 1.0322 7 7 2.9306 3.9553 0.0399 8 14 1.7483 4.6744 2.4411 9 1 2.7813 4.5659 3.5024 10 1 1.6962 6.0721 1.9422 11 1 0.4244 4.2982 2.9986 12 6 2.0444 -0.7322 1.2414 13 6 3.5212 -0.9723 1.1250 14 6 4.1817 -0.9041 0.0139 15 6 3.5649 -0.5650 -1.3114 16 6 2.0455 -0.7339 -1.2443 17 1 -0.3633 0.5056 0.8947 18 1 -0.3633 0.5221 -0.8852 19 1 -0.3634 -1.0276 -0.0095 20 1 2.5799 1.6944 -0.7313 21 1 3.2594 4.8678 0.0399 22 1 1.5293 -1.6880 1.3365 23 1 1.8453 -0.1273 2.1260 24 1 4.0667 -1.2177 2.0242 25 1 5.2428 -1.1033 0.0425 26 1 3.8027 0.4676 -1.5670 27 1 3.9685 -1.2268 -2.0777 28 1 1.5895 -0.3061 -2.1372 29 1 1.7971 -1.7931 -1.1778 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307475763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = -2.501246 kcal Electronic energy + Delta-G solvation = -11317.131221 eV Core-core repulsion = 9432.522460 eV Total energy + Delta-G solvation = -1884.608760 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.04890 -35.48971 -33.51548 -31.59052 -30.61173 -27.30281 -25.77403 -23.84667 -21.12359 -19.22758 -18.26221 -16.78755 -16.25723 -15.70248 -15.28362 -14.60434 -14.35285 -13.81234 -13.25634 -13.16805 -12.98219 -12.77346 -12.72410 -12.52759 -12.21041 -12.14528 -11.46708 -11.23124 -10.86488 -10.71036 -9.66628 -8.87600 -7.86238 -5.10624 1.46838 1.47669 1.55534 1.63098 2.60514 3.46882 3.93200 3.97924 4.02413 4.38075 4.51187 4.65098 4.68668 4.79995 4.92586 4.98906 5.08694 5.11729 5.13724 5.34574 5.44283 5.53822 5.56587 5.66655 6.01962 6.27773 6.37513 7.43226 8.23911 8.46172 9.38228 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.048274 B = 0.014416 C = 0.013693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.880912 B = 1941.876995 C = 2044.307594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 N -0.723 5.723 4 C -0.212 4.212 5 H 0.072 0.928 6 C -0.082 4.082 7 N -0.973 5.973 8 Si 0.961 3.039 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.271 1.271 12 C -0.095 4.095 13 C -0.149 4.149 14 C -0.164 4.164 15 C -0.083 4.083 16 C -0.110 4.110 17 H 0.036 0.964 18 H 0.040 0.960 19 H 0.072 0.928 20 H 0.372 0.628 21 H 0.246 0.754 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -11.093 -0.510 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.092 3.908 3 N -0.364 5.364 4 C -0.345 4.345 5 H 0.090 0.910 6 C -0.273 4.273 7 N -0.626 5.626 8 Si 0.792 3.208 9 H -0.220 1.220 10 H -0.226 1.226 11 H -0.196 1.196 12 C -0.134 4.134 13 C -0.167 4.167 14 C -0.182 4.182 15 C -0.120 4.120 16 C -0.148 4.148 17 H 0.055 0.945 18 H 0.059 0.941 19 H 0.091 0.909 20 H 0.205 0.795 21 H 0.055 0.945 22 H 0.103 0.897 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.593 -11.046 -0.353 11.166 hybrid contribution 0.265 1.312 0.610 1.471 sum -1.328 -9.735 0.257 9.828 Atomic orbital electron populations 1.22140 0.96683 1.00916 1.00650 1.19995 0.92459 0.84289 0.94051 1.42662 1.60753 1.07930 1.25027 1.19464 1.23153 0.91969 0.99872 0.90964 1.25395 1.02114 0.99198 1.00643 1.69805 1.41914 1.16716 1.34127 0.85298 0.77877 0.78397 0.79250 1.22050 1.22624 1.19609 1.20901 0.93608 0.99572 0.99307 1.21996 0.96671 1.00523 0.97482 1.22010 0.99268 1.01654 0.95243 1.20323 0.95481 1.00578 0.95647 1.21754 0.95238 1.00711 0.97048 0.94480 0.94070 0.90878 0.79526 0.94520 0.89716 0.93219 0.88404 0.87841 0.93274 0.89565 0.92077 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.46 71.98 0.61 -4.53 15 2 C 0.18 7.01 0.76 3.74 0.00 7.02 15 3 N -0.72 -36.03 4.62 -302.71 -1.40 -37.43 15 4 C -0.21 -11.71 8.58 84.03 0.72 -10.99 15 5 H 0.07 3.87 6.73 -2.91 -0.02 3.85 15 6 C -0.08 -4.78 5.50 84.86 0.47 -4.32 15 7 N -0.97 -60.59 13.06 21.65 0.28 -60.30 15 8 Si 0.96 47.22 29.55 68.60 2.03 49.25 15 9 H -0.29 -14.27 7.11 99.48 0.71 -13.57 15 10 H -0.30 -14.89 7.11 99.48 0.71 -14.18 15 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 12 C -0.10 -3.43 4.89 29.66 0.15 -3.28 15 13 C -0.15 -5.24 9.68 27.04 0.26 -4.97 15 14 C -0.16 -5.57 9.74 27.04 0.26 -5.31 15 15 C -0.08 -2.75 5.67 29.66 0.17 -2.58 15 16 C -0.11 -3.54 5.00 30.73 0.15 -3.38 15 17 H 0.04 1.41 7.35 -2.38 -0.02 1.40 15 18 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.07 2.04 8.14 -2.39 -0.02 2.03 15 20 H 0.37 20.16 6.17 -92.71 -0.57 19.59 15 21 H 0.25 14.98 8.31 -92.71 -0.77 14.21 15 22 H 0.08 2.51 8.10 -2.39 -0.02 2.50 15 23 H 0.05 2.01 6.98 -2.39 -0.02 2.00 15 24 H 0.10 3.17 8.06 -2.91 -0.02 3.15 15 25 H 0.10 3.16 8.06 -2.91 -0.02 3.13 15 26 H 0.05 1.93 6.80 -2.39 -0.02 1.91 15 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 29 H 0.09 2.33 8.13 -2.39 -0.02 2.31 15 Total: -1.00 -62.96 234.08 4.25 -58.71 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.54 Total: 22.12 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 2.79 Total: -32.35 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -1.12 Total: -97.73 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -62.96 4.25 -58.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307475763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.207 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds