Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.64216 * 2 1 4 4 C 1.36935 * 119.99801 * 300.42014 * 3 2 1 5 5 H 1.08003 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.38811 * 119.99745 * 180.02562 * 4 3 2 7 7 N 1.31620 * 120.00372 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 269.99982 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99472 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00079 * 8 6 4 12 12 C 1.53022 * 109.81834 * 239.46777 * 2 1 3 13 13 C 1.50070 * 110.14599 * 190.77739 * 12 2 1 14 14 C 1.29434 * 124.07578 * 17.13462 * 13 12 2 15 15 C 1.50069 * 124.07853 * 359.52871 * 14 13 12 16 16 C 1.53020 * 110.14562 * 17.13149 * 15 14 13 17 17 H 1.09001 * 109.46761 * 60.00142 * 1 2 3 18 18 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47022 * 300.00506 * 1 2 3 20 20 H 0.97000 * 119.99781 * 120.41795 * 3 2 1 21 21 H 0.97000 * 119.99954 * 359.97438 * 7 6 4 22 22 H 1.08996 * 109.35974 * 310.98709 * 12 2 1 23 23 H 1.09004 * 109.35602 * 70.57092 * 12 2 1 24 24 H 1.08004 * 117.95839 * 197.15046 * 13 12 2 25 25 H 1.08008 * 117.96156 * 179.55251 * 14 13 12 26 26 H 1.08998 * 109.35841 * 256.92524 * 15 14 13 27 27 H 1.08995 * 109.24986 * 137.27140 * 15 14 13 28 28 H 1.08998 * 109.64435 * 190.88007 * 16 15 14 29 29 H 1.09001 * 109.64253 * 70.24638 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.6871 2.2264 -1.0227 5 1 1.0599 1.8769 -1.8294 6 6 2.1541 3.5336 -1.0229 7 7 2.9189 3.9594 -0.0400 8 14 1.6961 4.6888 -2.4176 9 1 2.7112 4.5887 -3.4968 10 1 0.3637 4.3124 -2.9548 11 1 1.6492 6.0835 -1.9100 12 6 2.0488 -0.7313 -1.2400 13 6 3.5261 -0.9669 -1.1208 14 6 4.1845 -0.8956 -0.0087 15 6 3.5643 -0.5575 1.3154 16 6 2.0456 -0.7315 1.2459 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 2.5861 1.6935 0.7244 21 1 3.1559 3.3599 0.6848 22 1 1.5368 -1.6888 -1.3354 23 1 1.8495 -0.1275 -2.1253 24 1 4.0741 -1.2109 -2.0190 25 1 5.2463 -1.0913 -0.0353 26 1 3.7983 0.4761 1.5706 27 1 3.9691 -1.2191 2.0812 28 1 1.5867 -0.3046 2.1376 29 1 1.8011 -1.7914 1.1758 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307475764.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = -3.042983 kcal Electronic energy + Delta-G solvation = -11354.127136 eV Core-core repulsion = 9469.494884 eV Total energy + Delta-G solvation = -1884.632252 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18155 -35.80369 -33.62160 -31.69157 -30.33619 -27.40189 -25.66515 -23.92734 -21.35173 -19.43141 -18.22121 -17.03769 -16.53423 -15.73565 -15.31030 -14.68632 -14.46801 -13.89955 -13.52286 -13.13979 -12.98960 -12.82613 -12.61482 -12.48338 -12.07617 -11.83807 -11.33539 -11.28422 -10.85901 -10.74032 -9.76589 -8.98020 -8.28554 -5.19247 1.53510 1.57166 1.67800 1.81244 2.75068 3.48473 3.75447 3.88195 3.92810 4.25985 4.41050 4.55410 4.58262 4.69878 4.83444 4.89228 4.98428 5.01884 5.04730 5.24571 5.33050 5.46493 5.48372 5.72708 5.92548 6.18339 6.59759 7.22153 8.13954 8.26080 9.24039 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.048465 B = 0.014477 C = 0.013750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.597082 B = 1933.701786 C = 2035.923592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.186 3.814 3 N -0.736 5.736 4 C -0.301 4.301 5 H 0.064 0.936 6 C -0.114 4.114 7 N -0.985 5.985 8 Si 1.123 2.877 9 H -0.290 1.290 10 H -0.275 1.275 11 H -0.296 1.296 12 C -0.095 4.095 13 C -0.147 4.147 14 C -0.166 4.166 15 C -0.083 4.083 16 C -0.111 4.111 17 H 0.035 0.965 18 H 0.073 0.927 19 H 0.039 0.961 20 H 0.358 0.642 21 H 0.242 0.758 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -11.300 0.109 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.097 3.903 3 N -0.378 5.378 4 C -0.433 4.433 5 H 0.082 0.918 6 C -0.304 4.304 7 N -0.634 5.634 8 Si 0.950 3.050 9 H -0.217 1.217 10 H -0.200 1.200 11 H -0.223 1.223 12 C -0.134 4.134 13 C -0.165 4.165 14 C -0.184 4.184 15 C -0.120 4.120 16 C -0.149 4.149 17 H 0.054 0.946 18 H 0.092 0.908 19 H 0.058 0.942 20 H 0.191 0.809 21 H 0.052 0.948 22 H 0.103 0.897 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.708 -9.861 -0.672 10.030 hybrid contribution 0.226 -1.048 0.720 1.292 sum -1.482 -10.909 0.048 11.010 Atomic orbital electron populations 1.22111 0.96652 1.00898 1.00556 1.19944 0.92458 0.83847 0.94089 1.42679 1.60500 1.08504 1.26147 1.20236 1.26611 0.94533 1.01932 0.91836 1.26933 0.99838 0.98349 1.05262 1.70946 1.41610 1.38068 1.12808 0.82653 0.75922 0.74049 0.72402 1.21745 1.19991 1.22311 1.20884 0.93671 0.99519 0.99280 1.22017 0.96606 1.00339 0.97581 1.22033 0.99393 1.01850 0.95166 1.20329 0.95416 1.00440 0.95804 1.21782 0.95287 1.00873 0.96944 0.94611 0.90793 0.94170 0.80931 0.94772 0.89674 0.93394 0.88287 0.87629 0.93500 0.89278 0.92049 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.46 71.98 0.61 -4.59 15 2 C 0.19 7.27 0.76 3.74 0.00 7.27 15 3 N -0.74 -36.77 4.63 -302.70 -1.40 -38.17 15 4 C -0.30 -16.86 8.57 84.03 0.72 -16.14 15 5 H 0.06 3.50 6.73 -2.91 -0.02 3.48 15 6 C -0.11 -6.70 5.50 84.86 0.47 -6.23 15 7 N -0.98 -62.97 13.70 21.65 0.30 -62.68 15 8 Si 1.12 53.63 29.92 68.60 2.05 55.68 15 9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 15 12 C -0.09 -3.47 4.91 29.66 0.15 -3.33 15 13 C -0.15 -5.22 9.68 27.05 0.26 -4.96 15 14 C -0.17 -5.63 9.74 27.05 0.26 -5.37 15 15 C -0.08 -2.70 5.67 29.66 0.17 -2.53 15 16 C -0.11 -3.58 5.01 30.73 0.15 -3.43 15 17 H 0.03 1.41 7.26 -2.39 -0.02 1.39 15 18 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 19 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.36 19.00 4.97 -92.71 -0.46 18.54 15 21 H 0.24 15.44 6.77 -92.71 -0.63 14.82 15 22 H 0.09 2.58 8.11 -2.39 -0.02 2.56 15 23 H 0.05 2.00 7.04 -2.38 -0.02 1.98 15 24 H 0.10 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.11 3.19 8.06 -2.91 -0.02 3.17 15 26 H 0.05 1.79 6.78 -2.39 -0.02 1.77 15 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 29 H 0.09 2.38 8.12 -2.39 -0.02 2.36 15 Total: -1.00 -65.52 232.31 4.54 -60.99 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.80 Total: 23.48 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 2.79 Total: -39.30 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -1.10 Total: -100.85 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 2.05 Total: 55.68 kcal Total: -65.52 4.54 -60.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307475764.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.943 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds