Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31002 * 119.99843 * 2 1 4 4 C 1.50701 * 119.99843 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47387 * 125.00147 * 4 3 2 6 6 C 1.36936 * 119.99911 * 89.99732 * 5 4 3 7 7 H 1.07996 * 119.99770 * 215.29766 * 6 5 4 8 8 C 1.38806 * 120.00074 * 35.29805 * 6 5 4 9 9 N 1.31622 * 120.00344 * 202.10674 * 8 6 5 10 10 Si 1.86805 * 120.00123 * 22.10954 * 8 6 5 11 11 H 1.48497 * 109.47036 * 264.72066 * 10 8 6 12 12 H 1.48500 * 109.46808 * 24.71464 * 10 8 6 13 13 H 1.48499 * 109.47297 * 144.71552 * 10 8 6 14 14 C 1.46498 * 119.99775 * 270.00164 * 5 4 3 15 15 C 1.53005 * 117.49707 * 192.09720 * 14 5 4 16 16 C 1.53004 * 117.49751 * 123.43860 * 14 5 4 17 17 H 1.09001 * 109.46913 * 300.00222 * 1 2 3 18 18 H 1.09003 * 109.46894 * 59.99623 * 1 2 3 19 19 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 20 20 H 1.07998 * 119.99956 * 179.97438 * 2 1 3 21 21 H 1.07997 * 119.99942 * 0.02562 * 3 2 1 22 22 H 1.09003 * 109.47038 * 5.00167 * 4 3 2 23 23 H 1.09001 * 109.46853 * 245.00542 * 4 3 2 24 24 H 0.96993 * 120.00344 * 179.97438 * 9 8 6 25 25 H 1.08994 * 115.55164 * 337.77109 * 14 5 4 26 26 H 1.09001 * 117.49477 * 0.02562 * 15 14 5 27 27 H 1.09000 * 117.49279 * 145.01885 * 15 14 5 28 28 H 1.08996 * 117.49855 * 214.97273 * 16 14 5 29 29 H 1.09001 * 117.49679 * 359.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 7 4.1578 1.9265 -1.1308 6 6 4.3860 3.2682 -0.9795 7 1 4.1872 3.9453 -1.7971 8 6 4.8728 3.7581 0.2246 9 7 4.6912 5.0224 0.5424 10 14 5.7856 2.6229 1.3941 11 1 4.8391 2.0909 2.4071 12 1 6.3770 1.4959 0.6290 13 1 6.8664 3.3796 2.0756 14 6 4.4025 1.2831 -2.4240 15 6 5.1719 2.0833 -3.4769 16 6 3.6689 1.8458 -3.6430 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 2.0470 -0.9353 0.0004 21 1 1.6220 2.0698 0.0004 22 1 4.0324 0.1107 -0.0886 23 1 4.0319 1.5690 0.9321 24 1 5.0310 5.3646 1.3839 25 1 4.5687 0.2064 -2.3894 26 1 5.4965 3.0883 -3.2071 27 1 5.8442 1.5329 -4.1351 28 1 3.3530 1.1394 -4.4106 29 1 3.0039 2.6945 -3.4828 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307626017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = 64.526096 kcal Electronic energy + Delta-G solvation = -10966.541172 eV Core-core repulsion = 9084.838935 eV Total energy + Delta-G solvation = -1881.702237 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.38236 -34.94753 -33.01372 -31.12230 -27.86705 -24.46386 -23.12004 -21.42266 -19.74897 -18.88128 -16.57146 -15.51945 -15.12322 -14.07571 -13.64556 -13.20680 -12.97558 -12.45989 -12.38581 -11.78636 -11.52889 -10.97261 -10.84271 -10.64969 -10.44921 -10.02557 -9.90448 -9.57653 -9.41343 -8.52762 -8.26619 -6.76717 -6.02470 -3.42037 2.85828 3.29103 3.45575 3.50474 4.48902 4.85555 4.90485 5.30772 5.48257 5.66125 5.79612 5.91491 5.97627 6.00627 6.07023 6.11505 6.33101 6.44000 6.46213 6.49309 6.68399 6.93510 7.13118 7.32157 7.47477 8.01642 8.35526 8.95555 9.68128 10.06629 11.12659 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.018871 C = 0.013506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.130473 B = 1483.372631 C = 2072.603374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.204 4.204 3 C -0.132 4.132 4 C 0.159 3.841 5 N -0.570 5.570 6 C -0.268 4.268 7 H 0.082 0.918 8 C 0.036 3.964 9 N -0.898 5.898 10 Si 0.878 3.122 11 H -0.284 1.284 12 H -0.269 1.269 13 H -0.300 1.300 14 C 0.125 3.875 15 C -0.194 4.194 16 C -0.220 4.220 17 H 0.056 0.944 18 H 0.057 0.943 19 H 0.050 0.950 20 H 0.098 0.902 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.264 0.736 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -8.947 -2.182 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.223 4.223 3 C -0.153 4.153 4 C 0.035 3.965 5 N -0.288 5.288 6 C -0.396 4.396 7 H 0.100 0.900 8 C -0.165 4.165 9 N -0.539 5.539 10 Si 0.709 3.291 11 H -0.213 1.213 12 H -0.193 1.193 13 H -0.229 1.229 14 C 0.016 3.984 15 C -0.233 4.233 16 C -0.261 4.261 17 H 0.075 0.925 18 H 0.076 0.924 19 H 0.070 0.930 20 H 0.116 0.884 21 H 0.125 0.875 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.150 -8.783 -2.027 9.549 hybrid contribution 0.467 -0.419 0.647 0.902 sum -2.683 -9.202 -1.380 9.684 Atomic orbital electron populations 1.20727 0.94047 1.01005 1.01333 1.22595 0.95413 0.97680 1.06621 1.23737 0.98385 0.97706 0.95438 1.20339 0.89817 0.94522 0.91831 1.43668 1.72893 1.06405 1.05851 1.18701 1.38911 0.81131 1.00897 0.89999 1.25381 0.97901 0.95294 0.97887 1.69859 1.45923 1.14584 1.23504 0.86924 0.80102 0.81272 0.80832 1.21254 1.19335 1.22857 1.21024 1.00943 0.93710 0.82689 1.23150 0.93590 1.03359 1.03184 1.23349 0.95027 1.04339 1.03343 0.92539 0.92402 0.93048 0.88377 0.87482 0.93532 0.92027 0.92603 0.89215 0.87871 0.90517 0.90752 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.17 36.01 0.37 -1.24 15 2 C -0.20 -3.44 9.87 -36.03 -0.36 -3.79 15 3 C -0.13 -2.67 9.48 -36.03 -0.34 -3.01 15 4 C 0.16 3.54 4.99 -5.19 -0.03 3.52 15 5 N -0.57 -13.77 2.46 -167.02 -0.41 -14.18 15 6 C -0.27 -7.46 8.65 -15.06 -0.13 -7.59 15 7 H 0.08 2.46 7.31 -52.49 -0.38 2.08 15 8 C 0.04 1.03 5.32 -17.43 -0.09 0.94 15 9 N -0.90 -27.28 13.97 55.49 0.78 -26.50 15 10 Si 0.88 22.22 24.92 -169.99 -4.24 17.98 15 11 H -0.28 -6.99 6.67 56.52 0.38 -6.61 15 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 13 H -0.30 -7.69 7.11 56.52 0.40 -7.29 15 14 C 0.13 2.61 6.60 -67.93 -0.45 2.16 15 15 C -0.19 -3.82 9.79 -26.69 -0.26 -4.08 15 16 C -0.22 -4.23 10.15 -26.69 -0.27 -4.50 15 17 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.10 1.53 7.84 -52.49 -0.41 1.12 15 21 H 0.11 2.32 8.05 -52.49 -0.42 1.90 15 22 H 0.05 0.93 7.69 -51.93 -0.40 0.53 15 23 H 0.06 1.49 2.94 -51.93 -0.15 1.34 15 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 25 H 0.09 1.67 8.11 -51.93 -0.42 1.25 15 26 H 0.10 2.28 6.82 -51.93 -0.35 1.93 15 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 29 H 0.09 1.87 8.14 -51.93 -0.42 1.44 15 LS Contribution 243.16 15.07 3.66 3.66 Total: -1.00 -29.37 243.16 -6.01 -35.38 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.24 Total: 1.26 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.56 Total: -17.60 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.36 Total: -40.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.24 Total: 17.98 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.37 -6.01 -35.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307626017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.902 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds