Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31002 * 119.99843 * 2 1 4 4 C 1.50701 * 119.99843 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47387 * 125.00147 * 4 3 2 6 6 C 1.36936 * 119.99911 * 89.99732 * 5 4 3 7 7 H 1.07996 * 119.99770 * 215.29766 * 6 5 4 8 8 C 1.38806 * 120.00074 * 35.29805 * 6 5 4 9 9 N 1.31622 * 120.00344 * 202.10674 * 8 6 5 10 10 Si 1.86805 * 120.00123 * 22.10954 * 8 6 5 11 11 H 1.48497 * 109.47036 * 264.72066 * 10 8 6 12 12 H 1.48500 * 109.46808 * 24.71464 * 10 8 6 13 13 H 1.48499 * 109.47297 * 144.71552 * 10 8 6 14 14 C 1.46498 * 119.99775 * 270.00164 * 5 4 3 15 15 C 1.53005 * 117.49707 * 192.09720 * 14 5 4 16 16 C 1.53004 * 117.49751 * 123.43860 * 14 5 4 17 17 H 1.09001 * 109.46913 * 300.00222 * 1 2 3 18 18 H 1.09003 * 109.46894 * 59.99623 * 1 2 3 19 19 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 20 20 H 1.07998 * 119.99956 * 179.97438 * 2 1 3 21 21 H 1.07997 * 119.99942 * 0.02562 * 3 2 1 22 22 H 1.09003 * 109.47038 * 5.00167 * 4 3 2 23 23 H 1.09001 * 109.46853 * 245.00542 * 4 3 2 24 24 H 0.96993 * 120.00344 * 179.97438 * 9 8 6 25 25 H 1.08994 * 115.55164 * 337.77109 * 14 5 4 26 26 H 1.09001 * 117.49477 * 0.02562 * 15 14 5 27 27 H 1.09000 * 117.49279 * 145.01885 * 15 14 5 28 28 H 1.08996 * 117.49855 * 214.97273 * 16 14 5 29 29 H 1.09001 * 117.49679 * 359.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 7 4.1578 1.9265 -1.1308 6 6 4.3860 3.2682 -0.9795 7 1 4.1872 3.9453 -1.7971 8 6 4.8728 3.7581 0.2246 9 7 4.6912 5.0224 0.5424 10 14 5.7856 2.6229 1.3941 11 1 4.8391 2.0909 2.4071 12 1 6.3770 1.4959 0.6290 13 1 6.8664 3.3796 2.0756 14 6 4.4025 1.2831 -2.4240 15 6 5.1719 2.0833 -3.4769 16 6 3.6689 1.8458 -3.6430 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 2.0470 -0.9353 0.0004 21 1 1.6220 2.0698 0.0004 22 1 4.0324 0.1107 -0.0886 23 1 4.0319 1.5690 0.9321 24 1 5.0310 5.3646 1.3839 25 1 4.5687 0.2064 -2.3894 26 1 5.4965 3.0883 -3.2071 27 1 5.8442 1.5329 -4.1351 28 1 3.3530 1.1394 -4.4106 29 1 3.0039 2.6945 -3.4828 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307626017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = 46.786984 kcal Electronic energy + Delta-G solvation = -10967.310398 eV Core-core repulsion = 9084.838935 eV Total energy + Delta-G solvation = -1882.471462 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.10025 -36.44827 -34.85216 -33.03366 -29.42917 -26.38289 -24.71229 -22.99226 -21.58079 -20.32274 -18.54158 -17.42735 -16.91283 -15.64790 -15.27688 -14.86751 -14.43921 -14.36227 -13.92838 -13.38320 -13.17148 -12.72255 -12.46669 -12.24332 -12.04291 -11.88593 -11.79641 -11.35525 -11.01679 -10.62247 -9.75382 -8.67699 -8.22010 -5.58206 1.26978 1.34825 1.44987 1.52754 2.39448 3.00253 3.22805 3.38919 4.10338 4.24667 4.29128 4.38638 4.46192 4.52240 4.65776 4.86177 4.88689 4.92745 4.97429 5.09931 5.21401 5.32295 5.52560 5.87610 5.88786 6.05319 6.15204 6.95983 7.61966 8.00529 8.97550 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.018871 C = 0.013506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.130473 B = 1483.372631 C = 2072.603374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.157 3.843 5 N -0.585 5.585 6 C -0.252 4.252 7 H 0.041 0.959 8 C -0.024 4.024 9 N -0.950 5.950 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.256 1.256 13 H -0.308 1.308 14 C 0.107 3.893 15 C -0.193 4.193 16 C -0.207 4.207 17 H 0.060 0.940 18 H 0.058 0.942 19 H 0.081 0.919 20 H 0.123 0.877 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.263 0.737 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -12.415 -2.492 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C -0.195 4.195 4 C 0.033 3.967 5 N -0.304 5.304 6 C -0.382 4.382 7 H 0.058 0.942 8 C -0.220 4.220 9 N -0.594 5.594 10 Si 0.775 3.225 11 H -0.201 1.201 12 H -0.180 1.180 13 H -0.237 1.237 14 C 0.000 4.000 15 C -0.232 4.232 16 C -0.247 4.247 17 H 0.079 0.921 18 H 0.076 0.924 19 H 0.100 0.900 20 H 0.141 0.859 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.445 -12.293 -2.359 12.982 hybrid contribution 0.421 0.613 0.631 0.975 sum -3.024 -11.680 -1.728 12.188 Atomic orbital electron populations 1.20826 0.92053 1.03076 1.01570 1.22977 0.96970 0.97183 1.00922 1.23357 0.97336 0.97827 1.01005 1.20398 0.91060 0.95267 0.89964 1.43794 1.73642 1.05228 1.07758 1.18508 1.37316 0.82866 0.99485 0.94164 1.26015 0.99164 0.96706 1.00067 1.69992 1.48106 1.16802 1.24484 0.85815 0.78400 0.79311 0.78929 1.20112 1.17984 1.23665 1.21418 1.01913 0.95295 0.81375 1.23146 0.94645 1.01817 1.03585 1.23295 0.94168 1.03730 1.03495 0.92115 0.92360 0.90036 0.85922 0.90542 0.90461 0.94378 0.92778 0.85649 0.91543 0.86781 0.86936 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 10.17 71.24 0.72 -2.19 15 2 C -0.16 -4.87 9.87 25.64 0.25 -4.61 15 3 C -0.17 -6.84 9.48 25.64 0.24 -6.60 15 4 C 0.16 6.70 4.99 85.63 0.43 7.12 15 5 N -0.59 -27.96 2.46 -682.34 -1.68 -29.64 15 6 C -0.25 -14.53 8.65 84.03 0.73 -13.80 15 7 H 0.04 2.60 7.31 -2.91 -0.02 2.58 15 8 C -0.02 -1.39 5.32 84.86 0.45 -0.94 15 9 N -0.95 -60.35 13.97 21.65 0.30 -60.04 15 10 Si 0.95 46.73 24.92 68.60 1.71 48.44 15 11 H -0.27 -12.88 6.67 99.48 0.66 -12.22 15 12 H -0.26 -11.94 7.11 99.48 0.71 -11.23 15 13 H -0.31 -15.37 7.11 99.48 0.71 -14.66 15 14 C 0.11 4.23 6.60 44.99 0.30 4.53 15 15 C -0.19 -7.35 9.79 30.62 0.30 -7.05 15 16 C -0.21 -7.59 10.15 30.62 0.31 -7.28 15 17 H 0.06 1.48 8.14 -2.39 -0.02 1.46 15 18 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 20 H 0.12 3.15 7.84 -2.91 -0.02 3.13 15 21 H 0.08 3.41 8.05 -2.91 -0.02 3.39 15 22 H 0.08 2.77 7.69 -2.39 -0.02 2.75 15 23 H 0.04 1.80 2.94 -2.39 -0.01 1.79 15 24 H 0.26 15.82 8.31 -92.71 -0.77 15.05 15 25 H 0.13 4.07 8.11 -2.39 -0.02 4.05 15 26 H 0.07 3.02 6.82 -2.39 -0.02 3.01 15 27 H 0.11 3.46 8.14 -2.39 -0.02 3.44 15 28 H 0.11 3.28 8.14 -2.39 -0.02 3.26 15 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -66.01 243.16 5.13 -60.88 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.06 Total: 11.18 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.73 Total: -30.82 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.38 Total: -89.69 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.71 Total: 48.44 kcal Total: -66.01 5.13 -60.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307626017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.668 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds