Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28713 * 125.30960 * 2 1 4 4 N 1.28981 * 109.02555 * 179.97438 * 3 2 1 5 5 C 1.34255 * 107.24966 * 0.02562 * 4 3 2 6 6 C 1.47974 * 126.71601 * 179.97438 * 5 4 3 7 7 O 1.21737 * 120.00195 * 180.02562 * 6 5 4 8 8 C 1.41789 * 119.99741 * 359.97438 * 6 5 4 9 9 H 1.07997 * 120.00313 * 0.02562 * 8 6 5 10 10 C 1.40353 * 119.99564 * 179.97438 * 8 6 5 11 11 N 1.30526 * 120.00477 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99835 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47283 * 90.00536 * 12 10 8 14 14 H 1.48504 * 109.47176 * 210.00502 * 12 10 8 15 15 H 1.48501 * 109.47103 * 330.00256 * 12 10 8 16 16 N 1.28874 * 125.30633 * 179.97438 * 2 1 3 17 17 H 1.08997 * 109.47397 * 270.03967 * 1 2 3 18 18 H 1.09007 * 109.46698 * 30.04124 * 1 2 3 19 19 H 1.09003 * 109.47179 * 150.03439 * 1 2 3 20 20 H 0.97004 * 120.00322 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2090 1.0503 0.0000 4 7 3.4470 0.6887 0.0005 5 6 3.4697 -0.6537 0.0003 6 6 4.6706 -1.5182 0.0002 7 8 4.5486 -2.7295 -0.0004 8 6 5.9633 -0.9358 -0.0002 9 1 6.0715 0.1387 0.0000 10 6 7.1024 -1.7559 0.0003 11 7 6.9717 -3.0546 0.0006 12 14 8.8055 -0.9887 0.0005 13 1 9.2566 -0.7851 1.4006 14 1 9.7550 -1.8910 -0.6992 15 1 8.7590 0.3200 -0.6998 16 7 2.2098 -1.0517 0.0005 17 1 -0.3634 0.0007 1.0276 18 1 -0.3633 0.8897 -0.5145 19 1 -0.3634 -0.8903 -0.5133 20 1 7.7589 -3.6213 0.0013 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575519039.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = 85.793922 kcal Electronic energy + Delta-G solvation = -10397.810593 eV Core-core repulsion = 8212.231250 eV Total energy + Delta-G solvation = -2185.579343 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.054 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.35673 -36.68218 -34.35376 -32.86516 -32.00384 -28.60223 -26.87433 -23.82158 -22.10795 -20.11402 -17.39314 -16.73176 -16.12557 -15.42085 -13.99318 -13.43975 -13.34820 -13.15349 -12.61191 -11.99211 -11.50055 -11.33265 -11.05127 -10.46877 -10.40919 -10.21679 -10.10129 -9.33212 -8.97093 -7.79684 -6.47172 -5.02158 1.90085 2.57148 2.68187 3.10595 3.13669 3.19860 3.97863 4.36355 4.61285 5.01920 5.17351 5.28036 5.59787 5.59994 6.50854 6.60920 6.88405 7.18452 8.06760 8.57298 8.69166 9.15988 10.14796 10.36341 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.090490 B = 0.011314 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.353883 B = 2474.176876 C = 2768.387151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.162 5.162 3 N -0.093 5.093 4 N -0.262 5.262 5 C 0.158 3.842 6 C 0.428 3.572 7 O -0.520 6.520 8 C -0.484 4.484 9 H 0.087 0.913 10 C 0.075 3.925 11 N -0.731 5.731 12 Si 0.919 3.081 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.258 1.258 16 N -0.297 5.297 17 H 0.093 0.907 18 H 0.104 0.896 19 H 0.104 0.896 20 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 5.131 -0.055 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.074 5.074 3 N -0.087 5.087 4 N -0.136 5.136 5 C -0.124 4.124 6 C 0.319 3.681 7 O -0.403 6.403 8 C -0.517 4.517 9 H 0.106 0.894 10 C -0.149 4.149 11 N -0.359 5.359 12 Si 0.742 3.258 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.181 1.181 16 N -0.149 5.149 17 H 0.111 0.889 18 H 0.122 0.878 19 H 0.122 0.878 20 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.050 4.868 -0.060 8.568 hybrid contribution 0.723 0.069 0.029 0.727 sum -6.327 4.937 -0.032 8.025 Atomic orbital electron populations 1.22182 0.70707 1.05951 1.05133 1.50119 1.10175 1.01706 1.45420 1.78741 0.97712 1.14879 1.17408 1.76108 1.08090 1.12336 1.17103 1.28554 0.94310 0.90496 0.99005 1.17323 0.83038 0.86463 0.81228 1.90556 1.85799 1.14321 1.49657 1.20815 0.89989 0.95684 1.45214 0.89433 1.26067 1.01671 0.94451 0.92697 1.69957 1.31853 1.04585 1.29554 0.86152 0.80094 0.80134 0.79395 1.19179 1.20057 1.18121 1.75251 1.04015 1.13859 1.21783 0.88889 0.87752 0.87768 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 11.62 59.85 0.70 1.78 14 2 N -0.16 -3.08 4.39 -16.64 -0.07 -3.15 14 3 N -0.09 -1.95 13.23 60.35 0.80 -1.15 14 4 N -0.26 -6.44 12.26 32.13 0.39 -6.04 14 5 C 0.16 4.20 8.05 -156.06 -1.26 2.94 14 6 C 0.43 12.77 6.95 -34.24 -0.24 12.54 14 7 O -0.52 -17.02 15.64 5.16 0.08 -16.94 14 8 C -0.48 -13.72 9.15 -37.43 -0.34 -14.06 14 9 H 0.09 2.34 7.71 -52.49 -0.40 1.94 14 10 C 0.08 2.02 5.50 -17.31 -0.10 1.92 14 11 N -0.73 -20.77 11.73 55.57 0.65 -20.12 14 12 Si 0.92 19.29 29.56 -169.99 -5.03 14.27 14 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 14 H -0.28 -5.57 7.11 56.52 0.40 -5.16 14 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 14 16 N -0.30 -7.05 12.17 32.14 0.39 -6.66 14 17 H 0.09 0.79 8.14 -51.93 -0.42 0.37 14 18 H 0.10 0.81 8.14 -51.92 -0.42 0.39 14 19 H 0.10 0.96 8.14 -51.93 -0.42 0.53 14 20 H 0.28 7.00 8.29 -40.82 -0.34 6.66 14 LS Contribution 202.01 15.07 3.04 3.04 Total: -1.00 -35.06 202.01 -1.78 -36.84 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: -0.81 Total: -5.21 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.24 Total: 5.12 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 2.16 Total: -37.13 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.08 Total: -16.94 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -35.06 -1.78 -36.84 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519039.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.638 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds