Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28713 * 125.30960 * 2 1 4 4 N 1.28981 * 109.02555 * 179.97438 * 3 2 1 5 5 C 1.34255 * 107.24966 * 0.02562 * 4 3 2 6 6 C 1.47974 * 126.71601 * 179.97438 * 5 4 3 7 7 O 1.21737 * 120.00195 * 180.02562 * 6 5 4 8 8 C 1.41789 * 119.99741 * 359.97438 * 6 5 4 9 9 H 1.07997 * 120.00313 * 0.02562 * 8 6 5 10 10 C 1.40353 * 119.99564 * 179.97438 * 8 6 5 11 11 N 1.30526 * 120.00477 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99835 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47283 * 90.00536 * 12 10 8 14 14 H 1.48504 * 109.47176 * 210.00502 * 12 10 8 15 15 H 1.48501 * 109.47103 * 330.00256 * 12 10 8 16 16 N 1.28874 * 125.30633 * 179.97438 * 2 1 3 17 17 H 1.08997 * 109.47397 * 270.03967 * 1 2 3 18 18 H 1.09007 * 109.46698 * 30.04124 * 1 2 3 19 19 H 1.09003 * 109.47179 * 150.03439 * 1 2 3 20 20 H 0.97004 * 120.00322 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2090 1.0503 0.0000 4 7 3.4470 0.6887 0.0005 5 6 3.4697 -0.6537 0.0003 6 6 4.6706 -1.5182 0.0002 7 8 4.5486 -2.7295 -0.0004 8 6 5.9633 -0.9358 -0.0002 9 1 6.0715 0.1387 0.0000 10 6 7.1024 -1.7559 0.0003 11 7 6.9717 -3.0546 0.0006 12 14 8.8055 -0.9887 0.0005 13 1 9.2566 -0.7851 1.4006 14 1 9.7550 -1.8910 -0.6992 15 1 8.7590 0.3200 -0.6998 16 7 2.2098 -1.0517 0.0005 17 1 -0.3634 0.0007 1.0276 18 1 -0.3633 0.8897 -0.5145 19 1 -0.3634 -0.8903 -0.5133 20 1 7.7589 -3.6213 0.0013 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575519039.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = 58.119251 kcal Electronic energy + Delta-G solvation = -10399.010657 eV Core-core repulsion = 8212.231250 eV Total energy + Delta-G solvation = -2186.779407 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.054 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.10955 -38.87340 -35.94639 -34.95434 -33.83019 -30.24326 -28.69712 -25.75898 -23.70891 -22.10807 -19.18912 -18.36259 -18.06463 -17.28602 -15.93055 -15.25826 -14.71793 -14.68820 -14.03163 -13.88978 -13.41283 -13.00639 -12.74689 -12.56891 -12.03543 -11.93683 -11.92937 -11.11711 -10.94311 -10.02404 -8.51899 -7.23914 0.18375 0.71413 1.24273 1.42983 1.46393 1.61724 2.22634 2.32743 3.09018 3.43468 3.45862 4.21875 4.26038 4.50330 4.60790 4.88452 5.13666 5.31762 5.91385 6.45865 6.56661 7.35177 7.99236 8.34442 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.090490 B = 0.011314 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.353883 B = 2474.176876 C = 2768.387151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.134 5.134 3 N -0.082 5.082 4 N -0.284 5.284 5 C 0.129 3.871 6 C 0.404 3.596 7 O -0.570 6.570 8 C -0.504 4.504 9 H 0.096 0.904 10 C 0.024 3.976 11 N -0.773 5.773 12 Si 1.007 2.993 13 H -0.254 1.254 14 H -0.260 1.260 15 H -0.249 1.249 16 N -0.308 5.308 17 H 0.124 0.876 18 H 0.142 0.858 19 H 0.123 0.877 20 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 6.524 -0.036 9.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.049 5.049 3 N -0.076 5.076 4 N -0.157 5.157 5 C -0.153 4.153 6 C 0.300 3.700 7 O -0.459 6.459 8 C -0.536 4.536 9 H 0.115 0.885 10 C -0.197 4.197 11 N -0.402 5.402 12 Si 0.824 3.176 13 H -0.178 1.178 14 H -0.184 1.184 15 H -0.172 1.172 16 N -0.162 5.162 17 H 0.142 0.858 18 H 0.160 0.840 19 H 0.142 0.858 20 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.190 6.296 -0.041 9.557 hybrid contribution 0.509 -0.337 0.027 0.611 sum -6.681 5.959 -0.015 8.953 Atomic orbital electron populations 1.23059 0.65910 1.08865 1.08117 1.50756 1.12364 1.00059 1.41699 1.78615 0.96874 1.14998 1.17089 1.76030 1.09928 1.11435 1.18301 1.27814 0.94531 0.91063 1.01884 1.17748 0.84857 0.86394 0.80972 1.90496 1.86994 1.16043 1.52385 1.21247 0.90629 0.96457 1.45256 0.88545 1.27351 1.06497 0.94702 0.91150 1.70051 1.34221 1.06615 1.29321 0.84869 0.73211 0.79329 0.80163 1.17840 1.18441 1.17187 1.75154 1.03609 1.15472 1.21984 0.85754 0.84030 0.85820 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 11.62 127.77 1.49 2.86 14 2 N -0.13 -4.81 4.39 -206.56 -0.91 -5.72 14 3 N -0.08 -3.31 13.23 37.02 0.49 -2.82 14 4 N -0.28 -13.93 12.26 -52.27 -0.64 -14.57 14 5 C 0.13 6.96 8.05 137.07 1.10 8.07 14 6 C 0.40 25.01 6.95 25.73 0.18 25.19 14 7 O -0.57 -39.02 15.64 -4.47 -0.07 -39.09 14 8 C -0.50 -29.16 9.15 23.66 0.22 -28.94 14 9 H 0.10 5.23 7.71 -2.91 -0.02 5.20 14 10 C 0.02 1.27 5.50 85.40 0.47 1.74 14 11 N -0.77 -44.77 11.73 21.89 0.26 -44.51 14 12 Si 1.01 38.90 29.56 68.60 2.03 40.93 14 13 H -0.25 -9.27 7.11 99.48 0.71 -8.57 14 14 H -0.26 -9.34 7.11 99.48 0.71 -8.64 14 15 H -0.25 -9.18 7.11 99.48 0.71 -8.47 14 16 N -0.31 -14.59 12.17 -52.22 -0.64 -15.23 14 17 H 0.12 1.58 8.14 -2.39 -0.02 1.56 14 18 H 0.14 1.55 8.14 -2.38 -0.02 1.53 14 19 H 0.12 1.82 8.14 -2.39 -0.02 1.80 14 20 H 0.29 14.75 8.29 -92.71 -0.77 13.98 14 Total: -1.00 -78.95 202.01 5.25 -73.71 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: 1.27 Total: -1.60 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 3.45 Total: 8.91 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.44 Total: -82.85 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.07 Total: -39.09 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -78.95 5.25 -73.71 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519039.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.828 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds