Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.50699 * 109.46966 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00464 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99673 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99782 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47120 * 89.99698 * 9 7 5 11 11 H 1.48503 * 109.46955 * 209.99711 * 9 7 5 12 12 H 1.48497 * 109.47049 * 329.99911 * 9 7 5 13 13 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 14 14 C 1.51104 * 104.82203 * 266.65909 * 13 2 1 15 15 C 1.30525 * 111.10650 * 343.50481 * 14 13 2 16 16 C 1.51094 * 111.10287 * 0.02562 * 15 14 13 17 17 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 18 18 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 19 19 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 20 20 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 21 21 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 22 22 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 23 23 H 0.96999 * 119.99949 * 180.02562 * 8 7 5 24 24 H 1.09002 * 110.38719 * 147.78988 * 13 2 1 25 25 H 1.09000 * 110.38599 * 25.52408 * 13 2 1 26 26 H 1.08001 * 124.43953 * 163.48841 * 14 13 2 27 27 H 1.07999 * 124.44678 * 179.97438 * 15 14 13 28 28 H 1.08999 * 110.38926 * 135.24917 * 16 15 14 29 29 H 1.09008 * 110.38956 * 257.50891 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0863 3.5367 1.1034 6 1 2.7660 3.8279 0.3163 7 6 1.7300 4.4451 2.0776 8 7 2.2182 5.6659 2.0485 9 14 0.5549 3.9413 3.4396 10 1 1.3281 3.3938 4.5831 11 1 -0.2202 5.1260 3.8880 12 1 -0.3773 2.9036 2.9303 13 6 2.0850 -0.8068 -1.1967 14 6 2.3033 -2.2006 -0.6554 15 6 2.3044 -2.2030 0.6499 16 6 2.0865 -0.8114 1.1966 17 1 -0.3634 -1.0251 0.0714 18 1 -0.3633 0.5745 0.8521 19 1 -0.3633 0.4507 -0.9235 20 1 1.8539 1.8361 -0.8730 21 1 0.4399 2.1796 1.0735 22 1 1.8182 1.6520 2.0686 23 1 1.9678 6.3049 2.7340 24 1 3.0282 -0.3799 -1.5378 25 1 1.3608 -0.8249 -2.0111 26 1 2.4400 -3.0793 -1.2681 27 1 2.4421 -3.0841 1.2590 28 1 1.3621 -0.8324 2.0109 29 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575561136.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = 14.653390 kcal Electronic energy + Delta-G solvation = -10945.161854 eV Core-core repulsion = 9061.296975 eV Total energy + Delta-G solvation = -1883.864879 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.03545 -34.45305 -32.27248 -29.40892 -27.94829 -26.64127 -25.04339 -21.41000 -18.92821 -18.23862 -16.86282 -15.56555 -14.83237 -14.49674 -13.71679 -13.26839 -12.87135 -12.47892 -12.05857 -11.84692 -11.72110 -11.33026 -11.16343 -10.88800 -10.63688 -10.50566 -9.99160 -9.79170 -9.24929 -8.65009 -8.57261 -7.43689 -6.04519 -4.01822 2.48582 3.29327 3.36419 3.38626 4.43016 4.85821 4.94501 5.11106 5.28662 5.40234 5.47411 5.74803 5.92524 5.97126 6.15538 6.20860 6.29646 6.33778 6.42939 6.59204 6.74080 6.88315 7.10038 7.14126 7.64960 7.95542 8.37884 8.68204 9.03975 9.57834 11.08942 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066021 B = 0.011014 C = 0.010440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.005183 B = 2541.654888 C = 2681.363215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.665 5.665 4 C 0.162 3.838 5 C -0.515 4.515 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.090 4.090 14 C -0.171 4.171 15 C -0.163 4.163 16 C -0.089 4.089 17 H 0.052 0.948 18 H 0.062 0.938 19 H 0.052 0.948 20 H 0.336 0.664 21 H -0.011 1.011 22 H 0.022 0.978 23 H 0.263 0.737 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -13.509 -3.183 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 N -0.295 5.295 4 C 0.034 3.966 5 C -0.554 4.554 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.128 4.128 14 C -0.189 4.189 15 C -0.181 4.181 16 C -0.126 4.126 17 H 0.071 0.929 18 H 0.081 0.919 19 H 0.071 0.929 20 H 0.154 0.846 21 H 0.007 0.993 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.309 -13.473 -2.756 13.944 hybrid contribution -1.526 -0.046 0.566 1.628 sum -3.835 -13.519 -2.190 14.222 Atomic orbital electron populations 1.22410 0.97200 1.01358 1.02133 1.21776 0.91562 0.91054 0.94522 1.60701 1.61304 1.00382 1.07103 1.20034 0.92958 0.93762 0.89839 1.21099 1.28162 0.93466 1.12649 0.90359 1.24901 0.95979 0.94794 0.97641 1.69903 1.44664 1.04475 1.35009 0.86843 0.81721 0.78257 0.82839 1.20139 1.21236 1.19252 1.21429 1.01381 0.92541 0.97411 1.23173 1.01877 0.97612 0.96217 1.23281 1.00702 0.97860 0.96280 1.21451 1.01796 0.91833 0.97513 0.92897 0.91878 0.92887 0.84647 0.99306 0.95981 0.92686 0.89743 0.91906 0.86454 0.86438 0.91946 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.25 37.16 0.31 -2.50 15 2 C 0.10 1.78 0.88 -129.73 -0.11 1.66 15 3 N -0.67 -13.91 6.12 -99.33 -0.61 -14.52 15 4 C 0.16 3.95 3.88 -4.98 -0.02 3.93 15 5 C -0.52 -14.89 9.87 -34.44 -0.34 -15.23 15 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 15 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 8 N -0.90 -27.97 13.96 55.43 0.77 -27.19 15 9 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 15 13 C -0.09 -1.32 6.06 -26.82 -0.16 -1.49 15 14 C -0.17 -2.25 10.78 -35.70 -0.38 -2.63 15 15 C -0.16 -2.25 10.78 -35.70 -0.38 -2.63 15 16 C -0.09 -1.47 5.14 -26.68 -0.14 -1.61 15 17 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 18 H 0.06 1.14 6.27 -51.93 -0.33 0.81 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.34 6.82 8.76 -39.29 -0.34 6.48 15 21 H -0.01 -0.26 5.33 -51.93 -0.28 -0.54 15 22 H 0.02 0.55 6.87 -51.93 -0.36 0.19 15 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 24 H 0.08 1.29 8.08 -51.93 -0.42 0.87 15 25 H 0.06 0.83 7.91 -51.93 -0.41 0.42 15 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.12 1.36 8.06 -52.49 -0.42 0.93 15 28 H 0.06 1.02 7.91 -51.93 -0.41 0.61 15 29 H 0.09 1.61 8.08 -51.92 -0.42 1.19 15 LS Contribution 237.38 15.07 3.58 3.58 Total: -1.00 -30.24 237.38 -6.50 -36.75 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.25 Total: 2.85 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.33 Total: -18.59 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.17 Total: -41.71 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.24 -6.50 -36.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575561136.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.401 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds