Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.50699 * 109.46966 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00464 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99673 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99782 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47120 * 89.99698 * 9 7 5 11 11 H 1.48503 * 109.46955 * 209.99711 * 9 7 5 12 12 H 1.48497 * 109.47049 * 329.99911 * 9 7 5 13 13 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 14 14 C 1.51104 * 104.82203 * 266.65909 * 13 2 1 15 15 C 1.30525 * 111.10650 * 343.50481 * 14 13 2 16 16 C 1.51094 * 111.10287 * 0.02562 * 15 14 13 17 17 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 18 18 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 19 19 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 20 20 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 21 21 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 22 22 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 23 23 H 0.96999 * 119.99949 * 180.02562 * 8 7 5 24 24 H 1.09002 * 110.38719 * 147.78988 * 13 2 1 25 25 H 1.09000 * 110.38599 * 25.52408 * 13 2 1 26 26 H 1.08001 * 124.43953 * 163.48841 * 14 13 2 27 27 H 1.07999 * 124.44678 * 179.97438 * 15 14 13 28 28 H 1.08999 * 110.38926 * 135.24917 * 16 15 14 29 29 H 1.09008 * 110.38956 * 257.50891 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0863 3.5367 1.1034 6 1 2.7660 3.8279 0.3163 7 6 1.7300 4.4451 2.0776 8 7 2.2182 5.6659 2.0485 9 14 0.5549 3.9413 3.4396 10 1 1.3281 3.3938 4.5831 11 1 -0.2202 5.1260 3.8880 12 1 -0.3773 2.9036 2.9303 13 6 2.0850 -0.8068 -1.1967 14 6 2.3033 -2.2006 -0.6554 15 6 2.3044 -2.2030 0.6499 16 6 2.0865 -0.8114 1.1966 17 1 -0.3634 -1.0251 0.0714 18 1 -0.3633 0.5745 0.8521 19 1 -0.3633 0.4507 -0.9235 20 1 1.8539 1.8361 -0.8730 21 1 0.4399 2.1796 1.0735 22 1 1.8182 1.6520 2.0686 23 1 1.9678 6.3049 2.7340 24 1 3.0282 -0.3799 -1.5378 25 1 1.3608 -0.8249 -2.0111 26 1 2.4400 -3.0793 -1.2681 27 1 2.4421 -3.0841 1.2590 28 1 1.3621 -0.8324 2.0109 29 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575561136.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = -6.080192 kcal Electronic energy + Delta-G solvation = -10946.060930 eV Core-core repulsion = 9061.296975 eV Total energy + Delta-G solvation = -1884.763955 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.33214 -36.13270 -34.32983 -31.00924 -29.16637 -28.41922 -26.41267 -23.38520 -20.26582 -19.48237 -18.91999 -16.91141 -16.49439 -16.12400 -15.49950 -14.87914 -14.49950 -14.10674 -13.77671 -13.24614 -12.95629 -12.85888 -12.64522 -12.42406 -12.21469 -11.97065 -11.81896 -11.46771 -11.30909 -10.81849 -9.74777 -9.11941 -8.31439 -6.35213 1.32842 1.33992 1.44676 1.45163 2.32311 3.02778 3.46579 3.64536 3.89596 4.13335 4.39345 4.50981 4.68232 4.76078 4.84533 4.92193 4.95357 5.03244 5.06247 5.10801 5.21301 5.39032 5.55034 5.64751 5.99983 6.11554 6.57880 6.67941 6.79822 7.29718 8.85536 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066021 B = 0.011014 C = 0.010440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.005183 B = 2541.654888 C = 2681.363215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.676 5.676 4 C 0.178 3.822 5 C -0.529 4.529 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.251 1.251 13 C -0.089 4.089 14 C -0.159 4.159 15 C -0.168 4.168 16 C -0.094 4.094 17 H 0.075 0.925 18 H 0.042 0.958 19 H 0.059 0.941 20 H 0.336 0.664 21 H -0.007 1.007 22 H 0.020 0.980 23 H 0.268 0.732 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -15.935 -2.997 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.305 5.305 4 C 0.049 3.951 5 C -0.567 4.567 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.175 1.175 13 C -0.126 4.126 14 C -0.177 4.177 15 C -0.186 4.186 16 C -0.132 4.132 17 H 0.094 0.906 18 H 0.061 0.939 19 H 0.078 0.922 20 H 0.154 0.846 21 H 0.010 0.990 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.168 0.832 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.528 -15.921 -2.588 16.512 hybrid contribution -1.068 0.738 0.415 1.363 sum -4.595 -15.183 -2.173 16.012 Atomic orbital electron populations 1.22333 0.96117 1.02491 1.01559 1.21996 0.92496 0.88996 0.96495 1.60593 1.61958 1.01973 1.06018 1.19716 0.92684 0.91550 0.91143 1.21400 1.27617 0.96064 1.11657 0.94545 1.25860 0.97925 0.94569 1.00500 1.70054 1.46485 1.05915 1.36387 0.85699 0.79465 0.78470 0.79236 1.19099 1.20454 1.17468 1.21412 1.01272 0.93149 0.96810 1.23372 1.00632 0.97518 0.96220 1.23327 1.01613 0.96919 0.96788 1.21460 1.00490 0.93789 0.97435 0.90625 0.93870 0.92244 0.84636 0.98984 0.96222 0.92345 0.90684 0.90125 0.83215 0.83855 0.92097 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 8.25 71.98 0.59 -4.45 15 2 C 0.09 3.02 0.88 4.74 0.00 3.03 15 3 N -0.68 -28.32 6.12 -468.16 -2.86 -31.19 15 4 C 0.18 8.68 3.88 85.56 0.33 9.01 15 5 C -0.53 -31.41 9.87 25.60 0.25 -31.16 15 6 H 0.04 2.39 8.06 -2.91 -0.02 2.37 15 7 C 0.01 0.53 5.47 84.66 0.46 0.99 15 8 N -0.95 -60.19 13.96 21.45 0.30 -59.90 15 9 Si 0.95 44.85 27.47 68.60 1.88 46.74 15 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 12 H -0.25 -11.10 6.54 99.48 0.65 -10.45 15 13 C -0.09 -2.39 6.06 30.53 0.19 -2.21 15 14 C -0.16 -3.60 10.78 26.26 0.28 -3.32 15 15 C -0.17 -4.11 10.78 26.26 0.28 -3.83 15 16 C -0.09 -3.00 5.14 30.63 0.16 -2.84 15 17 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 18 H 0.04 1.47 6.27 -2.39 -0.01 1.46 15 19 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.34 13.82 8.76 -89.70 -0.79 13.04 15 21 H -0.01 -0.35 5.33 -2.38 -0.01 -0.37 15 22 H 0.02 0.97 6.87 -2.39 -0.02 0.96 15 23 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 24 H 0.07 2.17 8.08 -2.39 -0.02 2.15 15 25 H 0.08 1.88 7.91 -2.39 -0.02 1.86 15 26 H 0.15 2.48 8.06 -2.91 -0.02 2.45 15 27 H 0.14 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.06 1.91 7.91 -2.39 -0.02 1.89 15 29 H 0.06 2.29 8.08 -2.38 -0.02 2.27 15 Total: -1.00 -65.83 237.38 2.15 -63.68 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.28 Total: 15.45 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 2.55 Total: -34.79 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -2.56 Total: -91.08 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -65.83 2.15 -63.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575561136.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.597 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds