Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 C 1.52999 * 109.46861 * 125.00636 * 3 2 1 5 5 H 1.09004 * 110.88892 * 302.57406 * 4 3 2 6 6 C 1.55159 * 111.00183 * 178.64960 * 4 3 2 7 7 C 1.54328 * 102.93839 * 206.42184 * 6 4 3 8 8 N 1.47019 * 107.27513 * 22.19416 * 7 6 4 9 9 C 1.36939 * 125.65366 * 181.09286 * 8 7 6 10 10 H 1.07995 * 120.00288 * 173.84579 * 9 8 7 11 11 C 1.38809 * 119.99528 * 353.85521 * 9 8 7 12 12 N 1.31623 * 120.00390 * 6.81674 * 11 9 8 13 13 Si 1.86804 * 119.99761 * 186.82961 * 11 9 8 14 14 H 1.48499 * 109.47449 * 94.97926 * 13 11 9 15 15 H 1.48503 * 109.46674 * 214.97847 * 13 11 9 16 16 H 1.48498 * 109.47192 * 334.97674 * 13 11 9 17 17 C 1.47432 * 108.70082 * 1.05786 * 8 7 6 18 18 H 1.08003 * 119.99970 * 179.97438 * 1 2 3 19 19 H 1.07998 * 119.99878 * 359.71694 * 1 2 3 20 20 H 1.07998 * 119.99861 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47057 * 245.00417 * 3 2 1 22 22 H 1.08995 * 109.47016 * 5.00695 * 3 2 1 23 23 H 1.08994 * 110.72240 * 324.78010 * 6 4 3 24 24 H 1.08999 * 110.71637 * 88.06261 * 6 4 3 25 25 H 1.09003 * 109.88093 * 262.77392 * 7 6 4 26 26 H 1.08999 * 110.00919 * 141.68252 * 7 6 4 27 27 H 0.97000 * 119.99796 * 179.97438 * 12 11 9 28 28 H 1.08997 * 110.36536 * 217.03201 * 17 8 7 29 29 H 1.08996 * 110.36545 * 94.71280 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 2.5055 1.1914 2.1237 6 6 3.8553 2.6500 1.1961 7 6 5.1507 2.2423 1.9292 8 7 5.2835 0.7836 1.8023 9 6 6.2913 0.0246 2.3346 10 1 6.2478 -1.0526 2.2704 11 6 7.3688 0.6398 2.9570 12 7 7.3594 1.9410 3.1552 13 14 8.8325 -0.3791 3.5131 14 1 9.8806 -0.3549 2.4614 15 1 9.3807 0.1878 4.7714 16 1 8.3997 -1.7799 3.7485 17 6 4.1515 0.2732 1.0075 18 1 -0.5400 -0.9353 -0.0004 19 1 -0.5400 0.9353 0.0046 20 1 1.8500 -0.9353 -0.0004 21 1 2.6212 1.4027 -0.9314 22 1 1.3586 2.1316 0.0897 23 1 4.0744 2.9792 0.1804 24 1 3.3274 3.4269 1.7491 25 1 5.0836 2.5183 2.9816 26 1 6.0090 2.7339 1.4711 27 1 8.1122 2.3707 3.5905 28 1 3.8220 -0.6916 1.3929 29 1 4.4329 0.1874 -0.0420 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599526290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 31.792451 kcal Electronic energy + Delta-G solvation = -10867.474159 eV Core-core repulsion = 8984.352485 eV Total energy + Delta-G solvation = -1883.121674 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.77004 -34.60409 -32.28051 -29.66890 -28.21927 -25.46057 -23.61286 -20.41951 -19.68045 -18.96825 -16.74711 -15.61775 -14.56340 -14.13664 -13.67555 -13.35301 -12.80869 -12.17289 -11.83162 -11.49418 -11.29860 -11.13024 -10.79474 -10.76010 -10.07227 -9.92502 -9.83773 -9.69925 -9.54876 -9.05427 -8.51866 -6.74497 -5.66448 -2.98283 2.47426 3.43536 3.48457 3.50600 4.55382 5.03244 5.33900 5.46593 5.52017 5.57297 5.71404 5.81507 6.03225 6.09738 6.25784 6.30157 6.46896 6.62084 6.66429 6.76132 6.88811 6.95156 7.11650 7.62963 7.72200 7.89138 8.33307 9.28620 9.89644 10.57541 11.45876 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.077903 B = 0.009945 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.333079 B = 2814.806035 C = 3102.325024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.083 4.083 4 C -0.100 4.100 5 H 0.072 0.928 6 C -0.140 4.140 7 C 0.176 3.824 8 N -0.608 5.608 9 C -0.228 4.228 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.281 1.281 17 C 0.142 3.858 18 H 0.092 0.908 19 H 0.092 0.908 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.251 0.749 28 H 0.034 0.966 29 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -0.812 -5.007 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.154 4.154 3 C -0.121 4.121 4 C -0.119 4.119 5 H 0.090 0.910 6 C -0.179 4.179 7 C 0.051 3.949 8 N -0.334 5.334 9 C -0.356 4.356 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.569 5.569 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 C 0.015 3.985 18 H 0.110 0.890 19 H 0.110 0.890 20 H 0.126 0.874 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.296 -0.777 -4.876 10.526 hybrid contribution 0.815 -0.515 0.357 1.028 sum -8.481 -1.292 -4.519 9.696 Atomic orbital electron populations 1.23742 0.95968 1.01263 1.04054 1.23102 0.95840 0.99177 0.97281 1.20753 0.97768 0.94557 0.99006 1.22311 0.95120 0.97337 0.97132 0.90970 1.22917 0.98549 0.96051 1.00344 1.21142 0.91805 0.84146 0.97783 1.44511 1.25203 1.03258 1.60462 1.19085 0.96674 0.89802 1.30040 0.90517 1.24821 0.98478 0.95919 1.01287 1.69995 1.31035 1.08070 1.47785 0.86127 0.83065 0.79072 0.77714 1.21665 1.21807 1.20654 1.21581 0.87567 0.94916 0.94389 0.89011 0.88971 0.87351 0.91029 0.91977 0.92563 0.92454 0.94175 0.93801 0.93845 0.94727 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.54 14.32 29.01 0.42 -2.13 15 2 C -0.14 -1.84 9.16 -36.03 -0.33 -2.17 15 3 C -0.08 -1.21 5.18 -27.88 -0.14 -1.36 15 4 C -0.10 -1.81 3.06 -88.47 -0.27 -2.08 15 5 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 6 C -0.14 -2.73 6.42 -24.89 -0.16 -2.89 15 7 C 0.18 4.47 5.38 -3.06 -0.02 4.45 15 8 N -0.61 -16.27 3.39 -170.07 -0.58 -16.85 15 9 C -0.23 -6.59 10.26 -15.06 -0.15 -6.74 15 10 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 11 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 15 12 N -0.92 -27.88 10.36 55.49 0.57 -27.30 15 13 Si 0.91 22.60 29.56 -169.99 -5.02 17.58 15 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 15 H -0.29 -7.28 7.11 56.52 0.40 -6.87 15 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 17 C 0.14 3.06 6.14 -2.53 -0.02 3.04 15 18 H 0.09 0.97 8.06 -52.48 -0.42 0.54 15 19 H 0.09 1.01 7.84 -52.49 -0.41 0.60 15 20 H 0.11 1.48 7.88 -52.49 -0.41 1.06 15 21 H 0.07 1.03 8.10 -51.93 -0.42 0.61 15 22 H 0.06 0.82 7.79 -51.93 -0.40 0.42 15 23 H 0.06 1.02 8.04 -51.93 -0.42 0.61 15 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.04 1.12 7.55 -51.93 -0.39 0.72 15 26 H 0.04 1.22 7.36 -51.93 -0.38 0.84 15 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 15 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 29 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 15 LS Contribution 241.23 15.07 3.64 3.64 Total: -1.00 -30.62 241.23 -6.66 -37.27 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.49 Total: -4.10 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.77 Total: -10.24 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.00 Total: -44.15 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.62 -6.66 -37.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.066 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds