Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 C 1.52999 * 109.46861 * 125.00636 * 3 2 1 5 5 H 1.09004 * 110.88892 * 302.57406 * 4 3 2 6 6 C 1.55159 * 111.00183 * 178.64960 * 4 3 2 7 7 C 1.54328 * 102.93839 * 206.42184 * 6 4 3 8 8 N 1.47019 * 107.27513 * 22.19416 * 7 6 4 9 9 C 1.36939 * 125.65366 * 181.09286 * 8 7 6 10 10 H 1.07995 * 120.00288 * 173.84579 * 9 8 7 11 11 C 1.38809 * 119.99528 * 353.85521 * 9 8 7 12 12 N 1.31623 * 120.00390 * 6.81674 * 11 9 8 13 13 Si 1.86804 * 119.99761 * 186.82961 * 11 9 8 14 14 H 1.48499 * 109.47449 * 94.97926 * 13 11 9 15 15 H 1.48503 * 109.46674 * 214.97847 * 13 11 9 16 16 H 1.48498 * 109.47192 * 334.97674 * 13 11 9 17 17 C 1.47432 * 108.70082 * 1.05786 * 8 7 6 18 18 H 1.08003 * 119.99970 * 179.97438 * 1 2 3 19 19 H 1.07998 * 119.99878 * 359.71694 * 1 2 3 20 20 H 1.07998 * 119.99861 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47057 * 245.00417 * 3 2 1 22 22 H 1.08995 * 109.47016 * 5.00695 * 3 2 1 23 23 H 1.08994 * 110.72240 * 324.78010 * 6 4 3 24 24 H 1.08999 * 110.71637 * 88.06261 * 6 4 3 25 25 H 1.09003 * 109.88093 * 262.77392 * 7 6 4 26 26 H 1.08999 * 110.00919 * 141.68252 * 7 6 4 27 27 H 0.97000 * 119.99796 * 179.97438 * 12 11 9 28 28 H 1.08997 * 110.36536 * 217.03201 * 17 8 7 29 29 H 1.08996 * 110.36545 * 94.71280 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 2.5055 1.1914 2.1237 6 6 3.8553 2.6500 1.1961 7 6 5.1507 2.2423 1.9292 8 7 5.2835 0.7836 1.8023 9 6 6.2913 0.0246 2.3346 10 1 6.2478 -1.0526 2.2704 11 6 7.3688 0.6398 2.9570 12 7 7.3594 1.9410 3.1552 13 14 8.8325 -0.3791 3.5131 14 1 9.8806 -0.3549 2.4614 15 1 9.3807 0.1878 4.7714 16 1 8.3997 -1.7799 3.7485 17 6 4.1515 0.2732 1.0075 18 1 -0.5400 -0.9353 -0.0004 19 1 -0.5400 0.9353 0.0046 20 1 1.8500 -0.9353 -0.0004 21 1 2.6212 1.4027 -0.9314 22 1 1.3586 2.1316 0.0897 23 1 4.0744 2.9792 0.1804 24 1 3.3274 3.4269 1.7491 25 1 5.0836 2.5183 2.9816 26 1 6.0090 2.7339 1.4711 27 1 8.1122 2.3707 3.5905 28 1 3.8220 -0.6916 1.3929 29 1 4.4329 0.1874 -0.0420 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599526290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 13.458326 kcal Electronic energy + Delta-G solvation = -10868.269186 eV Core-core repulsion = 8984.352485 eV Total energy + Delta-G solvation = -1883.916701 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44437 -36.03385 -34.11434 -31.50536 -29.87144 -27.26813 -25.32528 -22.16696 -21.24736 -20.19924 -18.83120 -17.08948 -16.56869 -15.77135 -15.31326 -14.58660 -14.36133 -13.88691 -13.71584 -13.20228 -13.00390 -12.68214 -12.50138 -12.33328 -12.00019 -11.78856 -11.50378 -11.30870 -11.24337 -10.70090 -10.09657 -8.88882 -7.86931 -5.21642 1.44214 1.46877 1.50424 1.55880 2.49172 3.31137 3.69116 3.86329 4.10288 4.16107 4.38061 4.43471 4.65003 4.71858 4.82354 4.95589 5.06621 5.08659 5.19968 5.24739 5.44498 5.51202 5.69104 5.76093 5.86016 5.99972 6.20133 7.09801 7.78063 8.44020 9.24363 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.077903 B = 0.009945 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.333079 B = 2814.806035 C = 3102.325024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.072 4.072 4 C -0.085 4.085 5 H 0.067 0.933 6 C -0.127 4.127 7 C 0.181 3.819 8 N -0.632 5.632 9 C -0.247 4.247 10 H 0.081 0.919 11 C -0.067 4.067 12 N -0.952 5.952 13 Si 0.980 3.020 14 H -0.286 1.286 15 H -0.293 1.293 16 H -0.267 1.267 17 C 0.136 3.864 18 H 0.106 0.894 19 H 0.106 0.894 20 H 0.101 0.899 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.007 0.993 27 H 0.247 0.753 28 H 0.036 0.964 29 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.971 -1.387 -5.749 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.181 4.181 3 C -0.109 4.109 4 C -0.104 4.104 5 H 0.086 0.914 6 C -0.165 4.165 7 C 0.055 3.945 8 N -0.359 5.359 9 C -0.376 4.376 10 H 0.099 0.901 11 C -0.260 4.260 12 N -0.601 5.601 13 Si 0.808 3.192 14 H -0.213 1.213 15 H -0.220 1.220 16 H -0.191 1.191 17 C 0.011 3.989 18 H 0.124 0.876 19 H 0.124 0.876 20 H 0.119 0.881 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.795 -1.373 -5.640 12.257 hybrid contribution 1.210 -0.360 0.576 1.388 sum -9.585 -1.733 -5.064 10.978 Atomic orbital electron populations 1.23982 0.95390 1.02642 1.00889 1.23019 0.96517 0.98441 1.00134 1.20644 0.97241 0.96021 0.97042 1.22210 0.94572 0.94748 0.98870 0.91431 1.22801 0.95651 0.97374 1.00652 1.20946 0.93703 0.83711 0.96091 1.44875 1.26190 1.03891 1.60919 1.19507 0.97674 0.90460 1.29968 0.90105 1.25716 1.01254 0.97157 1.01889 1.70222 1.31474 1.09729 1.48649 0.85037 0.79213 0.78087 0.76882 1.21322 1.21985 1.19111 1.21787 0.87212 0.96114 0.93738 0.87606 0.87621 0.88058 0.90783 0.89847 0.90893 0.90183 0.97837 0.97461 0.94385 0.94543 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.87 14.32 67.78 0.97 -2.90 15 2 C -0.16 -3.97 9.16 25.65 0.23 -3.73 15 3 C -0.07 -1.87 5.18 29.85 0.15 -1.72 15 4 C -0.08 -2.93 3.06 -9.40 -0.03 -2.96 15 5 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 6 C -0.13 -4.76 6.42 31.78 0.20 -4.56 15 7 C 0.18 9.40 5.38 86.73 0.47 9.87 15 8 N -0.63 -34.37 3.39 -691.98 -2.35 -36.72 15 9 C -0.25 -14.52 10.26 84.03 0.86 -13.66 15 10 H 0.08 4.54 7.84 -2.91 -0.02 4.51 15 11 C -0.07 -3.98 5.48 84.86 0.47 -3.51 15 12 N -0.95 -59.45 10.36 21.65 0.22 -59.22 15 13 Si 0.98 47.07 29.56 68.60 2.03 49.09 15 14 H -0.29 -13.52 7.11 99.48 0.71 -12.82 15 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 15 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 17 C 0.14 5.81 6.14 86.85 0.53 6.34 15 18 H 0.11 1.83 8.06 -2.91 -0.02 1.81 15 19 H 0.11 1.86 7.84 -2.91 -0.02 1.83 15 20 H 0.10 2.58 7.88 -2.91 -0.02 2.56 15 21 H 0.07 1.90 8.10 -2.39 -0.02 1.88 15 22 H 0.08 1.85 7.79 -2.39 -0.02 1.83 15 23 H 0.07 2.51 8.04 -2.39 -0.02 2.49 15 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.00 0.20 7.55 -2.39 -0.02 0.18 15 26 H 0.01 0.42 7.36 -2.39 -0.02 0.40 15 27 H 0.25 14.90 8.31 -92.71 -0.77 14.13 15 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 29 H 0.02 0.97 8.00 -2.39 -0.02 0.95 15 Total: -1.00 -66.95 241.23 4.85 -62.10 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 1.09 Total: 1.57 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.86 Total: -16.82 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -2.12 Total: -95.94 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -66.95 4.85 -62.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.554 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds