Wall clock time and date at job start Mon Mar 30 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47446 * 110.99737 * 2 1 4 4 C 1.54318 * 107.23303 * 236.74038 * 3 2 1 5 5 C 1.55138 * 103.01792 * 337.71992 * 4 3 2 6 6 C 1.47840 * 110.99988 * 239.15824 * 2 1 3 7 7 H 1.08996 * 110.37806 * 27.53589 * 6 2 1 8 8 C 1.50698 * 110.37259 * 265.30015 * 6 2 1 9 9 C 1.35033 * 120.00211 * 6.45559 * 8 6 2 10 10 C 1.40068 * 120.00138 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00003 * 359.97438 * 10 9 8 12 12 C 1.40313 * 120.00085 * 179.97438 * 10 9 8 13 13 N 1.30685 * 119.99889 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99746 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47240 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.46865 * 209.99720 * 14 12 10 17 17 H 1.48504 * 109.47103 * 329.99666 * 14 12 10 18 18 H 1.08997 * 109.47423 * 60.12781 * 1 2 3 19 19 H 1.09006 * 109.47254 * 180.12862 * 1 2 3 20 20 H 1.09000 * 109.47337 * 300.12676 * 1 2 3 21 21 H 1.08996 * 109.88895 * 356.15286 * 3 2 1 22 22 H 1.09001 * 109.88694 * 117.33682 * 3 2 1 23 23 H 1.09003 * 110.70170 * 96.09788 * 4 3 2 24 24 H 1.09002 * 110.70518 * 219.33180 * 4 3 2 25 25 H 1.09006 * 110.98929 * 277.55627 * 5 4 3 26 26 H 1.09000 * 111.02473 * 153.76108 * 5 4 3 27 27 H 1.08007 * 120.00223 * 186.45703 * 8 6 2 28 28 H 1.07996 * 119.99651 * 359.97438 * 9 8 6 29 29 H 0.96998 * 119.99787 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2325 5 6 3.3046 0.0445 -1.5438 6 6 1.9988 -0.7076 -1.1850 7 1 1.2890 -0.6501 -2.0102 8 6 2.2948 -2.1463 -0.8481 9 6 1.9457 -2.6429 0.3581 10 6 2.2205 -3.9803 0.6710 11 1 2.7111 -4.6144 -0.0526 12 6 1.8582 -4.4961 1.9246 13 7 2.1150 -5.7438 2.2167 14 14 1.0089 -3.3996 3.1758 15 1 -0.4622 -3.4860 2.9920 16 1 1.3636 -3.8462 4.5469 17 1 1.4501 -1.9947 2.9831 18 1 -0.3634 0.5118 -0.8911 19 1 -0.3634 -1.0277 0.0023 20 1 -0.3634 0.5158 0.8888 21 1 1.1754 2.0892 -0.0688 22 1 2.5696 1.5540 0.9105 23 1 2.3743 1.9547 -2.0694 24 1 3.7999 2.1035 -0.9905 25 1 4.1302 -0.2832 -0.9119 26 1 3.5498 -0.0801 -2.5985 27 1 2.7863 -2.7802 -1.5714 28 1 1.4547 -2.0089 1.0814 29 1 1.8642 -6.1005 3.0831 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687677977.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:39 Heat of formation + Delta-G solvation = 6.417658 kcal Electronic energy + Delta-G solvation = -10940.881685 eV Core-core repulsion = 9056.659678 eV Total energy + Delta-G solvation = -1884.222008 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.44139 -33.86209 -31.65517 -31.45731 -28.34459 -25.25419 -24.00048 -20.61261 -20.44421 -17.65374 -17.35058 -15.55857 -14.86448 -14.44728 -13.57787 -13.03883 -12.94179 -12.51792 -12.13409 -11.86183 -11.32878 -11.21717 -10.86609 -10.69255 -10.58627 -10.24651 -9.97585 -9.74425 -9.36944 -9.00840 -7.67692 -7.58374 -6.67201 -4.12463 3.08544 3.20827 3.32764 3.88535 4.11770 4.64967 5.14079 5.25357 5.42466 5.57570 5.81324 5.85992 5.96184 6.04940 6.10718 6.27554 6.36495 6.46642 6.49415 6.84658 6.96383 7.20817 7.48611 7.67595 7.75142 8.10565 8.64494 8.68977 9.15145 9.34172 10.38723 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054250 B = 0.012637 C = 0.011188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.001951 B = 2215.234519 C = 2502.091522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.525 5.525 3 C 0.043 3.957 4 C -0.144 4.144 5 C -0.122 4.122 6 C 0.151 3.849 7 H 0.024 0.976 8 C -0.407 4.407 9 C 0.031 3.969 10 C -0.454 4.454 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.832 5.832 14 Si 0.896 3.104 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.243 1.243 18 H 0.016 0.984 19 H 0.071 0.929 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 11.269 -1.900 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.249 5.249 3 C -0.085 4.085 4 C -0.183 4.183 5 C -0.160 4.160 6 C 0.044 3.956 7 H 0.042 0.958 8 C -0.429 4.429 9 C 0.010 3.990 10 C -0.484 4.484 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.459 5.459 14 Si 0.721 3.279 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.167 1.167 18 H 0.035 0.965 19 H 0.090 0.910 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.834 10.768 -1.268 10.997 hybrid contribution -0.653 0.701 -0.108 0.964 sum -2.487 11.469 -1.377 11.816 Atomic orbital electron populations 1.22484 0.88766 1.02219 0.98990 1.63455 1.06880 1.12095 1.42514 1.22786 0.97354 0.90309 0.98088 1.22787 0.99377 0.98275 0.97813 1.22814 0.99728 0.93044 1.00431 1.20949 0.92263 0.94263 0.88096 0.95791 1.21686 1.26762 0.93302 1.01143 1.20091 0.91440 0.93255 0.94190 1.19611 1.33302 0.96176 0.99317 0.90581 1.26302 0.93382 0.95005 0.99167 1.69598 1.38753 1.14638 1.22899 0.86447 0.80106 0.82618 0.78726 1.19353 1.20908 1.16684 0.96509 0.91006 0.92483 0.93789 0.91269 0.92413 0.91637 0.90695 0.92125 0.90272 0.89745 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.66 60.06 0.52 0.95 15 2 N -0.53 -10.38 3.70 -232.99 -0.86 -11.25 15 3 C 0.04 0.69 6.90 -2.83 -0.02 0.67 15 4 C -0.14 -2.14 6.94 -24.91 -0.17 -2.31 15 5 C -0.12 -2.17 6.49 -24.59 -0.16 -2.33 15 6 C 0.15 3.15 2.97 -67.34 -0.20 2.95 15 7 H 0.02 0.50 7.78 -51.93 -0.40 0.09 15 8 C -0.41 -10.16 9.30 -35.45 -0.33 -10.49 15 9 C 0.03 0.82 7.93 -40.03 -0.32 0.50 15 10 C -0.45 -13.22 9.64 -38.12 -0.37 -13.59 15 11 H 0.08 2.38 8.06 -52.48 -0.42 1.96 15 12 C 0.08 2.14 5.52 -17.26 -0.10 2.04 15 13 N -0.83 -23.67 13.92 55.57 0.77 -22.89 15 14 Si 0.90 20.84 27.47 -169.99 -4.67 16.17 15 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.24 -5.67 6.36 56.52 0.36 -5.31 15 18 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 15 19 H 0.07 1.36 7.78 -51.93 -0.40 0.96 15 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.04 0.63 7.58 -51.93 -0.39 0.23 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.42 8.05 -51.93 -0.42 1.01 15 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.08 2.05 8.05 -52.48 -0.42 1.63 15 28 H 0.08 2.20 3.67 -52.49 -0.19 2.00 15 29 H 0.28 7.20 8.29 -40.82 -0.34 6.86 15 LS Contribution 238.09 15.07 3.59 3.59 Total: -1.00 -29.12 238.09 -6.68 -35.80 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.37 Total: 0.19 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.14 Total: -21.60 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.09 Total: -34.14 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.12 -6.68 -35.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677977.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.214 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds