Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99935 * 2 1 4 4 H 1.08997 * 109.47258 * 0.27388 * 3 2 1 5 5 C 1.53008 * 109.46923 * 240.27356 * 3 2 1 6 6 N 1.46504 * 109.46934 * 120.27849 * 3 2 1 7 7 C 1.36935 * 119.99545 * 236.35970 * 6 3 2 8 8 H 1.07996 * 119.99850 * 150.25064 * 7 6 3 9 9 C 1.38811 * 120.00096 * 330.25176 * 7 6 3 10 10 N 1.31617 * 120.00379 * 343.42980 * 9 7 6 11 11 Si 1.86801 * 119.99877 * 163.43262 * 9 7 6 12 12 H 1.48496 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47294 * 120.00036 * 11 9 7 14 14 H 1.48505 * 109.47234 * 239.99811 * 11 9 7 15 15 C 1.46491 * 120.00160 * 56.36483 * 6 3 2 16 16 C 1.53006 * 117.49661 * 192.20109 * 15 6 3 17 17 C 1.52995 * 117.50238 * 123.53993 * 15 6 3 18 18 H 1.08002 * 119.99696 * 359.72627 * 1 2 3 19 19 H 1.07996 * 119.99950 * 179.72586 * 1 2 3 20 20 H 1.08002 * 120.00212 * 180.27232 * 2 1 3 21 21 H 1.09001 * 109.46647 * 60.00408 * 5 3 2 22 22 H 1.08993 * 109.46661 * 179.97438 * 5 3 2 23 23 H 1.08997 * 109.47179 * 300.00080 * 5 3 2 24 24 H 0.96995 * 120.00372 * 185.04159 * 10 9 7 25 25 H 1.09004 * 115.55420 * 337.86512 * 15 6 3 26 26 H 1.08999 * 117.49883 * 359.97438 * 16 15 6 27 27 H 1.08998 * 117.49942 * 145.01775 * 16 15 6 28 28 H 1.09000 * 117.50305 * 214.97823 * 17 15 6 29 29 H 1.08999 * 117.49746 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0049 5 6 2.9380 1.3891 -1.2528 6 7 2.9108 1.3798 1.1928 7 6 2.7824 2.4327 2.0589 8 1 2.9998 2.2983 3.1082 9 6 2.3728 3.6726 1.5883 10 7 2.4207 3.9361 0.2996 11 14 1.7536 4.9675 2.7838 12 1 1.7981 4.4266 4.1661 13 1 2.6145 6.1744 2.6961 14 1 0.3554 5.3308 2.4397 15 6 3.8954 0.3283 1.4589 16 6 4.5446 0.3026 2.8442 17 6 5.3554 0.7536 1.6266 18 1 -0.5400 0.9353 0.0045 19 1 -0.5400 -0.9353 -0.0045 20 1 1.8501 -0.9353 -0.0044 21 1 2.3076 1.3336 -2.1402 22 1 3.4826 2.3333 -1.2529 23 1 3.6463 0.5607 -1.2577 24 1 2.2044 4.8252 -0.0220 25 1 3.7026 -0.6296 0.9757 26 1 4.2395 1.0684 3.5573 27 1 4.7793 -0.6720 3.2721 28 1 6.1232 0.0755 1.2540 29 1 5.5835 1.8158 1.5385 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706945841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = 51.781026 kcal Electronic energy + Delta-G solvation = -11266.814524 eV Core-core repulsion = 9384.559620 eV Total energy + Delta-G solvation = -1882.254904 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.14113 -36.26182 -34.33950 -31.81059 -29.99985 -26.20741 -23.60959 -22.98617 -22.02763 -20.12251 -18.28513 -17.18897 -16.42003 -15.74643 -15.32436 -14.38497 -14.33298 -13.72723 -13.65651 -12.86460 -12.79845 -12.68619 -12.62462 -12.12595 -11.97559 -11.61655 -11.37170 -11.21673 -10.87839 -10.45451 -10.09173 -8.43467 -7.87905 -5.30724 1.42066 1.46196 1.55027 1.59492 2.49760 3.18375 3.46272 3.62604 4.22049 4.33345 4.48683 4.54707 4.58164 4.86895 4.94046 4.98611 5.06014 5.10035 5.18873 5.38656 5.53051 5.61411 5.71270 5.83462 5.97176 6.18898 6.48164 7.20081 7.91985 8.37538 9.17959 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.019703 C = 0.014985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.553389 B = 1420.777887 C = 1868.060278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.207 3.793 4 H 0.067 0.933 5 C -0.128 4.128 6 N -0.565 5.565 7 C -0.262 4.262 8 H 0.064 0.936 9 C -0.041 4.041 10 N -0.919 5.919 11 Si 0.958 3.042 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.290 1.290 15 C 0.111 3.889 16 C -0.193 4.193 17 C -0.219 4.219 18 H 0.078 0.922 19 H 0.117 0.883 20 H 0.111 0.889 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.250 0.750 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -7.111 0.203 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.178 4.178 3 C 0.102 3.898 4 H 0.085 0.915 5 C -0.187 4.187 6 N -0.281 5.281 7 C -0.392 4.392 8 H 0.081 0.919 9 C -0.237 4.237 10 N -0.564 5.564 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.219 1.219 14 H -0.216 1.216 15 C 0.002 3.998 16 C -0.232 4.232 17 C -0.259 4.259 18 H 0.096 0.904 19 H 0.135 0.865 20 H 0.129 0.871 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.306 -6.955 0.111 6.962 hybrid contribution -0.086 1.204 0.497 1.306 sum -0.392 -5.751 0.608 5.796 Atomic orbital electron populations 1.23790 0.95697 1.01498 1.02591 1.23704 0.96709 0.99320 0.98109 1.19449 0.91818 0.93013 0.85545 0.91548 1.21918 0.99261 1.00260 0.97225 1.43734 1.37054 1.22231 1.25120 1.19394 1.40935 0.88793 0.90126 0.91877 1.25733 1.01938 0.98803 0.97240 1.70102 1.52708 1.20257 1.13353 0.85343 0.77506 0.79196 0.79238 1.19586 1.21929 1.21644 1.21322 0.87331 0.93133 0.98029 1.23121 1.05773 1.02234 0.92063 1.23260 0.97966 1.00039 1.04680 0.90374 0.86539 0.87122 0.93813 0.94064 0.94088 0.94089 0.86863 0.90935 0.87210 0.88072 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.85 14.32 67.78 0.97 -5.88 15 2 C -0.16 -6.09 8.44 25.65 0.22 -5.87 15 3 C 0.21 9.73 2.14 44.25 0.09 9.83 15 4 H 0.07 3.62 5.56 -2.39 -0.01 3.61 15 5 C -0.13 -5.67 9.03 71.98 0.65 -5.02 15 6 N -0.56 -27.95 2.72 -658.38 -1.79 -29.74 15 7 C -0.26 -14.34 8.89 84.03 0.75 -13.59 15 8 H 0.06 3.46 6.08 -2.91 -0.02 3.44 15 9 C -0.04 -2.26 4.89 84.86 0.41 -1.84 15 10 N -0.92 -52.84 10.12 21.65 0.22 -52.62 15 11 Si 0.96 45.10 29.59 68.60 2.03 47.13 15 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 15 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 15 15 C 0.11 4.60 5.60 44.99 0.25 4.85 15 16 C -0.19 -7.33 9.85 30.62 0.30 -7.03 15 17 C -0.22 -8.66 10.21 30.62 0.31 -8.35 15 18 H 0.08 2.91 7.83 -2.91 -0.02 2.88 15 19 H 0.12 3.21 8.06 -2.91 -0.02 3.18 15 20 H 0.11 3.74 7.26 -2.91 -0.02 3.72 15 21 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.04 2.10 7.19 -2.39 -0.02 2.08 15 23 H 0.04 1.64 7.76 -2.39 -0.02 1.62 15 24 H 0.25 13.99 8.32 -92.71 -0.77 13.22 15 25 H 0.11 4.12 7.07 -2.38 -0.02 4.10 15 26 H 0.07 3.08 6.22 -2.39 -0.01 3.06 15 27 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 28 H 0.10 3.34 8.14 -2.39 -0.02 3.32 15 29 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -59.33 241.05 5.52 -53.81 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.11 Total: 14.34 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.96 Total: -32.91 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.57 Total: -82.36 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -59.33 5.52 -53.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706945841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.587 kcal (2) G-P(sol) polarization free energy of solvation -59.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds