Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.50706 * 109.46864 * 240.00364 * 2 1 3 5 5 H 1.08005 * 119.99881 * 245.45900 * 4 2 1 6 6 C 1.37875 * 120.00213 * 65.46383 * 4 2 1 7 7 N 1.31511 * 119.99989 * 9.55078 * 6 4 2 8 8 Si 1.86797 * 119.99942 * 189.55096 * 6 4 2 9 9 H 1.48502 * 109.47314 * 84.99458 * 8 6 4 10 10 H 1.48508 * 109.46908 * 204.99530 * 8 6 4 11 11 H 1.48498 * 109.47367 * 324.99151 * 8 6 4 12 12 N 1.46895 * 109.46949 * 120.00784 * 2 1 3 13 13 C 1.46903 * 110.99976 * 274.99567 * 12 2 1 14 14 H 1.09006 * 115.54540 * 350.58212 * 13 12 2 15 15 C 1.53000 * 117.52083 * 136.28318 * 13 12 2 16 16 C 1.52992 * 117.50172 * 204.91363 * 13 12 2 17 17 C 1.52994 * 138.58525 * 121.59136 * 16 13 12 18 18 C 1.52993 * 138.59000 * 23.37944 * 16 13 12 19 19 H 1.09007 * 109.46956 * 63.62847 * 1 2 3 20 20 H 1.08995 * 109.47414 * 183.62679 * 1 2 3 21 21 H 1.08999 * 109.46737 * 303.63183 * 1 2 3 22 22 H 0.96997 * 120.00017 * 180.02562 * 7 6 4 23 23 H 1.00902 * 111.00727 * 38.94850 * 12 2 1 24 24 H 1.08995 * 117.50077 * 214.97282 * 15 13 12 25 25 H 1.08999 * 117.49641 * 0.02562 * 15 13 12 26 26 H 1.09001 * 117.50290 * 336.59897 * 17 16 13 27 27 H 1.09004 * 117.49562 * 121.61874 * 17 16 13 28 28 H 1.08994 * 117.50275 * 238.38585 * 18 16 13 29 29 H 1.09007 * 117.49519 * 23.38213 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5786 -1.6371 -1.1340 6 6 1.7946 -0.1773 -2.4797 7 7 1.2993 1.0357 -2.5935 8 14 2.1761 -1.1778 -4.0102 9 1 1.0242 -2.0608 -4.3243 10 1 2.4229 -0.2610 -5.1522 11 1 3.3847 -2.0070 -3.7711 12 7 2.0196 -0.6926 1.1993 13 6 2.0825 0.2223 2.3469 14 1 1.9233 1.2760 2.1173 15 6 1.5660 -0.2936 3.6915 16 6 3.0688 -0.1155 3.4666 17 6 4.2668 0.5235 4.1717 18 6 4.3600 -0.9140 3.6561 19 1 -0.3633 0.4565 -0.9208 20 1 -0.3634 -1.0255 0.0650 21 1 -0.3633 0.5692 0.8557 22 1 1.1317 1.4106 -3.4723 23 1 1.4495 -1.4981 1.4099 24 1 1.0671 0.4206 4.3465 25 1 1.1798 -1.3123 3.7249 26 1 4.8204 1.2898 3.6291 27 1 4.1978 0.6679 5.2500 28 1 4.3523 -1.7153 4.3949 29 1 4.9747 -1.0937 2.7740 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715351469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 53.476839 kcal Electronic energy + Delta-G solvation = -10685.229689 eV Core-core repulsion = 8803.048320 eV Total energy + Delta-G solvation = -1882.181368 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.04528 -35.16331 -32.62586 -30.83243 -27.20258 -25.05917 -22.07782 -21.22460 -20.28692 -18.64541 -16.26010 -14.98515 -14.66520 -14.59323 -14.22908 -13.12889 -12.60931 -12.34540 -11.60859 -11.25369 -11.13517 -11.04170 -10.88035 -10.57579 -10.24098 -10.04751 -9.85521 -9.53110 -9.45886 -8.90785 -8.31692 -7.14986 -5.99716 -3.99171 3.34486 3.40385 3.44376 4.06528 4.19515 4.46480 4.77140 5.16771 5.27385 5.33209 5.64768 5.87885 5.97723 6.02380 6.12209 6.14051 6.23756 6.39802 6.50370 6.64513 6.79262 7.03202 7.34494 7.60726 7.90436 8.23186 8.53791 8.61916 9.07004 9.64311 11.09740 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059745 B = 0.009856 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.545748 B = 2840.253371 C = 3057.918295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.210 3.790 3 H 0.042 0.958 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.650 5.650 13 C 0.094 3.906 14 H 0.103 0.897 15 C -0.163 4.163 16 C -0.227 4.227 17 C -0.138 4.138 18 C -0.123 4.123 19 H 0.071 0.929 20 H 0.029 0.971 21 H 0.012 0.988 22 H 0.260 0.740 23 H 0.329 0.671 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -1.589 9.584 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.102 3.898 3 H 0.060 0.940 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.278 5.278 13 C -0.019 4.019 14 H 0.121 0.879 15 C -0.202 4.202 16 C -0.228 4.228 17 C -0.175 4.175 18 C -0.160 4.160 19 H 0.090 0.910 20 H 0.049 0.951 21 H 0.031 0.969 22 H 0.070 0.930 23 H 0.148 0.852 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.905 -1.384 9.226 9.521 hybrid contribution -0.823 -0.381 -0.597 1.086 sum 1.081 -1.765 8.628 8.873 Atomic orbital electron populations 1.22414 1.00883 0.98602 1.00298 1.19302 0.89255 0.94973 0.86221 0.93976 1.21097 1.34691 1.08267 0.89702 0.91983 1.24936 0.95594 0.94746 0.99003 1.69964 1.45732 1.14043 1.23718 0.86572 0.78686 0.80011 0.82492 1.20718 1.21441 1.19920 1.60380 1.56879 1.08175 1.02367 1.22238 0.97247 0.96847 0.85520 0.87950 1.23241 0.92969 1.01788 1.02231 1.21787 0.87422 1.07371 1.06268 1.22578 0.99449 0.96622 0.98821 1.22441 0.97985 0.93526 1.02081 0.91030 0.95143 0.96926 0.93028 0.85230 0.89457 0.89104 0.89012 0.89497 0.89688 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.05 37.16 0.34 -3.51 15 2 C 0.21 5.33 2.40 -68.86 -0.17 5.17 15 3 H 0.04 1.19 7.51 -51.93 -0.39 0.80 15 4 C -0.50 -13.99 8.76 -34.44 -0.30 -14.29 15 5 H 0.06 1.76 7.83 -52.48 -0.41 1.35 15 6 C 0.06 1.64 5.17 -17.82 -0.09 1.54 15 7 N -0.90 -26.00 12.16 55.43 0.67 -25.33 15 8 Si 0.89 21.64 29.55 -169.99 -5.02 16.62 15 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 12 N -0.65 -14.24 6.51 -100.96 -0.66 -14.90 15 13 C 0.09 1.78 6.14 -67.72 -0.42 1.37 15 14 H 0.10 2.02 7.60 -51.93 -0.39 1.62 15 15 C -0.16 -2.56 10.23 -26.73 -0.27 -2.84 15 16 C -0.23 -3.79 5.60 -154.52 -0.87 -4.65 15 17 C -0.14 -1.95 10.53 -26.73 -0.28 -2.23 15 18 C -0.12 -1.86 10.53 -26.73 -0.28 -2.14 15 19 H 0.07 1.87 6.83 -51.93 -0.35 1.51 15 20 H 0.03 0.67 8.07 -51.93 -0.42 0.25 15 21 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 15 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.33 6.79 8.22 -39.29 -0.32 6.47 15 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.09 1.36 8.09 -51.93 -0.42 0.94 15 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 29 H 0.10 1.56 8.14 -51.93 -0.42 1.13 15 LS Contribution 249.25 15.07 3.76 3.76 Total: -1.00 -28.73 249.25 -7.97 -36.71 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.38 Total: 4.74 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.34 Total: -21.59 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.02 Total: -40.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.73 -7.97 -36.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715351469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.184 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds