Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.50706 * 109.46864 * 240.00364 * 2 1 3 5 5 H 1.08005 * 119.99881 * 245.45900 * 4 2 1 6 6 C 1.37875 * 120.00213 * 65.46383 * 4 2 1 7 7 N 1.31511 * 119.99989 * 9.55078 * 6 4 2 8 8 Si 1.86797 * 119.99942 * 189.55096 * 6 4 2 9 9 H 1.48502 * 109.47314 * 84.99458 * 8 6 4 10 10 H 1.48508 * 109.46908 * 204.99530 * 8 6 4 11 11 H 1.48498 * 109.47367 * 324.99151 * 8 6 4 12 12 N 1.46895 * 109.46949 * 120.00784 * 2 1 3 13 13 C 1.46903 * 110.99976 * 274.99567 * 12 2 1 14 14 H 1.09006 * 115.54540 * 350.58212 * 13 12 2 15 15 C 1.53000 * 117.52083 * 136.28318 * 13 12 2 16 16 C 1.52992 * 117.50172 * 204.91363 * 13 12 2 17 17 C 1.52994 * 138.58525 * 121.59136 * 16 13 12 18 18 C 1.52993 * 138.59000 * 23.37944 * 16 13 12 19 19 H 1.09007 * 109.46956 * 63.62847 * 1 2 3 20 20 H 1.08995 * 109.47414 * 183.62679 * 1 2 3 21 21 H 1.08999 * 109.46737 * 303.63183 * 1 2 3 22 22 H 0.96997 * 120.00017 * 180.02562 * 7 6 4 23 23 H 1.00902 * 111.00727 * 38.94850 * 12 2 1 24 24 H 1.08995 * 117.50077 * 214.97282 * 15 13 12 25 25 H 1.08999 * 117.49641 * 0.02562 * 15 13 12 26 26 H 1.09001 * 117.50290 * 336.59897 * 17 16 13 27 27 H 1.09004 * 117.49562 * 121.61874 * 17 16 13 28 28 H 1.08994 * 117.50275 * 238.38585 * 18 16 13 29 29 H 1.09007 * 117.49519 * 23.38213 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5786 -1.6371 -1.1340 6 6 1.7946 -0.1773 -2.4797 7 7 1.2993 1.0357 -2.5935 8 14 2.1761 -1.1778 -4.0102 9 1 1.0242 -2.0608 -4.3243 10 1 2.4229 -0.2610 -5.1522 11 1 3.3847 -2.0070 -3.7711 12 7 2.0196 -0.6926 1.1993 13 6 2.0825 0.2223 2.3469 14 1 1.9233 1.2760 2.1173 15 6 1.5660 -0.2936 3.6915 16 6 3.0688 -0.1155 3.4666 17 6 4.2668 0.5235 4.1717 18 6 4.3600 -0.9140 3.6561 19 1 -0.3633 0.4565 -0.9208 20 1 -0.3634 -1.0255 0.0650 21 1 -0.3633 0.5692 0.8557 22 1 1.1317 1.4106 -3.4723 23 1 1.4495 -1.4981 1.4099 24 1 1.0671 0.4206 4.3465 25 1 1.1798 -1.3123 3.7249 26 1 4.8204 1.2898 3.6291 27 1 4.1978 0.6679 5.2500 28 1 4.3523 -1.7153 4.3949 29 1 4.9747 -1.0937 2.7740 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715351469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 35.650488 kcal Electronic energy + Delta-G solvation = -10686.002697 eV Core-core repulsion = 8803.048320 eV Total energy + Delta-G solvation = -1882.954377 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.43009 -36.91456 -34.43238 -32.51087 -28.98054 -27.18504 -23.23774 -22.72790 -22.17380 -19.99644 -18.29066 -16.85780 -16.20773 -15.88292 -15.77728 -14.78371 -14.46837 -14.11221 -13.49640 -12.96995 -12.80435 -12.58268 -12.34620 -12.28971 -12.23342 -11.91244 -11.45128 -11.04408 -10.73834 -10.67791 -10.46040 -8.81835 -8.13570 -6.21346 1.42886 1.43361 1.53803 2.43192 2.81392 2.90475 3.16270 3.44059 3.81108 4.01514 4.23601 4.62497 4.70203 4.74137 4.79628 4.85374 4.88051 4.91160 5.03325 5.07955 5.08430 5.35480 5.39990 5.63173 5.75260 6.21891 6.65576 6.82573 6.92590 7.47082 8.94695 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059745 B = 0.009856 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.545748 B = 2840.253371 C = 3057.918295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.656 5.656 13 C 0.055 3.945 14 H 0.085 0.915 15 C -0.133 4.133 16 C -0.246 4.246 17 C -0.121 4.121 18 C -0.124 4.124 19 H 0.043 0.957 20 H 0.041 0.959 21 H 0.031 0.969 22 H 0.262 0.738 23 H 0.334 0.666 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -2.497 10.785 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.108 3.892 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.284 5.284 13 C -0.056 4.056 14 H 0.103 0.897 15 C -0.171 4.171 16 C -0.248 4.248 17 C -0.158 4.158 18 C -0.161 4.161 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.153 0.847 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.044 -2.294 10.451 10.893 hybrid contribution -0.827 -0.064 -0.909 1.231 sum 1.217 -2.358 9.542 9.904 Atomic orbital electron populations 1.22209 0.99646 0.99282 0.99640 1.19019 0.90086 0.92859 0.87242 0.97823 1.21409 1.35005 1.08191 0.91244 0.92831 1.25722 0.95416 0.95630 1.01968 1.70081 1.46495 1.15360 1.24436 0.85548 0.78713 0.78559 0.78672 1.19738 1.21016 1.19573 1.60271 1.56914 1.08700 1.02546 1.22172 1.01682 0.95642 0.86111 0.89722 1.23233 0.92399 1.02530 0.98974 1.21959 0.88665 1.09571 1.04581 1.22725 0.96952 0.95851 1.00228 1.22536 0.96413 0.94978 1.02171 0.93814 0.93990 0.94963 0.92921 0.84667 0.87299 0.88090 0.89272 0.86591 0.87364 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.08 9.05 71.98 0.65 -6.42 15 2 C 0.22 11.26 2.40 44.17 0.11 11.36 15 3 H 0.00 0.22 7.51 -2.39 -0.02 0.20 15 4 C -0.52 -29.65 8.76 25.60 0.22 -29.42 15 5 H 0.05 3.07 7.83 -2.91 -0.02 3.05 15 6 C 0.01 0.63 5.17 84.65 0.44 1.07 15 7 N -0.92 -54.63 12.16 21.45 0.26 -54.37 15 8 Si 0.96 44.57 29.55 68.60 2.03 46.59 15 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 12 N -0.66 -28.93 6.51 -473.32 -3.08 -32.01 15 13 C 0.06 2.09 6.14 44.91 0.28 2.36 15 14 H 0.08 3.44 7.60 -2.38 -0.02 3.42 15 15 C -0.13 -3.83 10.23 30.59 0.31 -3.52 15 16 C -0.25 -7.76 5.60 -52.19 -0.29 -8.06 15 17 C -0.12 -3.10 10.53 30.59 0.32 -2.78 15 18 C -0.12 -3.48 10.53 30.59 0.32 -3.16 15 19 H 0.04 2.31 6.83 -2.38 -0.02 2.29 15 20 H 0.04 1.85 8.07 -2.39 -0.02 1.83 15 21 H 0.03 1.36 8.12 -2.39 -0.02 1.34 15 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.33 13.66 8.22 -89.69 -0.74 12.92 15 24 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.10 2.71 8.09 -2.39 -0.02 2.69 15 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 28 H 0.11 2.53 8.14 -2.39 -0.02 2.51 15 29 H 0.08 2.53 8.14 -2.38 -0.02 2.51 15 Total: -1.00 -61.68 249.25 1.95 -59.73 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.38 Total: 18.62 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 2.36 Total: -38.56 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.82 Total: -86.38 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.68 1.95 -59.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715351469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.379 kcal (2) G-P(sol) polarization free energy of solvation -61.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds