Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47260 * 2 1 4 4 C 1.50696 * 109.47029 * 120.00229 * 2 1 3 5 5 H 1.08001 * 119.99924 * 119.99829 * 4 2 1 6 6 C 1.37874 * 120.00160 * 299.99801 * 4 2 1 7 7 N 1.31518 * 120.00254 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00112 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46881 * 60.00422 * 8 6 4 10 10 H 1.48505 * 109.47179 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47450 * 300.00131 * 8 6 4 12 12 N 1.46902 * 109.46952 * 240.00280 * 2 1 3 13 13 C 1.46895 * 110.99985 * 85.00044 * 12 2 1 14 14 H 1.08999 * 115.54982 * 350.72137 * 13 12 2 15 15 C 1.53005 * 117.49993 * 136.38773 * 13 12 2 16 16 C 1.52995 * 60.03007 * 107.47828 * 15 13 12 17 17 C 1.52999 * 138.58973 * 229.12087 * 16 15 13 18 18 C 1.52992 * 138.58961 * 130.90188 * 16 15 13 19 19 H 1.08998 * 109.46972 * 59.99598 * 1 2 3 20 20 H 1.09003 * 109.46700 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47114 * 299.99945 * 1 2 3 22 22 H 0.96993 * 120.00379 * 180.02562 * 7 6 4 23 23 H 1.00898 * 110.99688 * 208.95587 * 12 2 1 24 24 H 1.09002 * 117.50166 * 214.97977 * 15 13 12 25 25 H 1.09002 * 117.49677 * 359.97438 * 15 13 12 26 26 H 1.08994 * 117.49863 * 336.59580 * 17 16 15 27 27 H 1.08996 * 117.49928 * 121.61806 * 17 16 15 28 28 H 1.08994 * 117.50298 * 238.38849 * 18 16 15 29 29 H 1.09002 * 117.49768 * 23.38316 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8260 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.6231 1.1994 -2.1949 15 6 3.3266 0.1577 -3.2351 16 6 1.9932 -0.3913 -3.7462 17 6 1.4534 -1.6594 -4.4105 18 6 1.1106 -0.2861 -4.9915 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7088 1.1612 3.4844 23 1 2.9173 -1.1205 -1.0288 24 1 3.6854 1.0916 -3.6678 25 1 4.0987 -0.5638 -2.9678 26 1 2.1603 -2.2777 -4.9637 27 1 0.6600 -2.1995 -3.8939 28 1 0.0918 0.0773 -4.8571 29 1 1.5920 -0.0005 -5.9268 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715351471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 36.175009 kcal Electronic energy + Delta-G solvation = -10695.579260 eV Core-core repulsion = 8812.647628 eV Total energy + Delta-G solvation = -1882.931632 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.41304 -36.88110 -34.44541 -32.46918 -29.08694 -27.28498 -23.22565 -22.90272 -21.68526 -19.99643 -18.41523 -16.96927 -16.00979 -15.90640 -15.78115 -15.31343 -14.49624 -13.76691 -13.43430 -12.84964 -12.65596 -12.56144 -12.50593 -12.28789 -12.21856 -11.98535 -11.30980 -11.00487 -10.73331 -10.70524 -10.52579 -8.88409 -8.14492 -6.29523 1.42615 1.44951 1.52563 2.40633 2.80262 2.89240 3.14182 3.42628 3.79709 4.00141 4.22490 4.65947 4.71759 4.79562 4.80482 4.84981 4.89806 5.02945 5.05714 5.09275 5.19567 5.35177 5.46652 5.66240 5.82968 6.18371 6.46388 6.75177 6.97131 7.41069 8.91240 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.074834 B = 0.009294 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.073343 B = 3011.931557 C = 3113.806682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.218 3.782 3 H -0.028 1.028 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.656 5.656 13 C 0.054 3.946 14 H 0.086 0.914 15 C -0.138 4.138 16 C -0.242 4.242 17 C -0.123 4.123 18 C -0.119 4.119 19 H 0.017 0.983 20 H 0.025 0.975 21 H 0.059 0.941 22 H 0.264 0.736 23 H 0.335 0.665 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -1.980 -10.371 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 H -0.010 1.010 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.285 5.285 13 C -0.057 4.057 14 H 0.103 0.897 15 C -0.177 4.177 16 C -0.243 4.243 17 C -0.160 4.160 18 C -0.156 4.156 19 H 0.036 0.964 20 H 0.045 0.955 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.847 -2.116 -10.364 10.738 hybrid contribution 0.822 0.335 1.239 1.524 sum 2.669 -1.780 -9.125 9.673 Atomic orbital electron populations 1.21538 0.97845 0.98703 0.98869 1.18943 0.92626 0.90879 0.86577 1.01034 1.21543 1.32000 1.12851 0.91587 0.92219 1.25755 0.95055 0.95649 1.02101 1.70017 1.37298 1.24055 1.24351 0.85496 0.78780 0.78579 0.78062 1.19424 1.20842 1.19667 1.60279 1.31683 1.31879 1.04648 1.22195 1.01266 0.94937 0.87343 0.89657 1.23224 0.90058 1.02335 1.02073 1.21929 1.01039 1.05563 0.95801 1.22557 1.02179 0.90042 1.01201 1.22743 0.98968 0.99336 0.94560 0.96358 0.95532 0.92252 0.92730 0.84631 0.87417 0.88353 0.87485 0.89748 0.88954 0.86699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 9.19 71.98 0.66 -5.14 15 2 C 0.22 11.53 2.50 44.17 0.11 11.64 15 3 H -0.03 -1.62 7.73 -2.39 -0.02 -1.64 15 4 C -0.54 -30.35 8.59 25.60 0.22 -30.13 15 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 15 6 C 0.01 0.77 5.30 84.65 0.45 1.22 15 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 15 8 Si 0.97 43.70 29.54 68.60 2.03 45.72 15 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 12 N -0.66 -29.36 6.58 -473.19 -3.11 -32.48 15 13 C 0.05 2.07 6.03 44.94 0.27 2.34 15 14 H 0.09 3.49 7.77 -2.39 -0.02 3.48 15 15 C -0.14 -4.18 10.23 30.59 0.31 -3.86 15 16 C -0.24 -7.57 5.60 -52.16 -0.29 -7.86 15 17 C -0.12 -3.34 10.53 30.60 0.32 -3.01 15 18 C -0.12 -2.96 10.53 30.59 0.32 -2.64 15 19 H 0.02 0.85 8.07 -2.39 -0.02 0.83 15 20 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.06 3.34 6.07 -2.39 -0.01 3.33 15 22 H 0.26 14.56 8.31 -92.71 -0.77 13.79 15 23 H 0.33 14.55 8.01 -89.70 -0.72 13.83 15 24 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.10 2.83 8.09 -2.39 -0.02 2.81 15 26 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -60.41 247.78 1.94 -58.47 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.40 Total: 19.02 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 2.38 Total: -37.46 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.87 Total: -85.76 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.41 1.94 -58.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715351471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -60.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds