Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54737 * 2 1 4 4 C 1.53001 * 117.50076 * 214.32886 * 2 1 3 5 5 C 1.52995 * 117.49917 * 145.70562 * 2 1 3 6 6 H 1.08997 * 117.50034 * 214.97885 * 5 2 1 7 7 C 1.53007 * 117.50024 * 0.02562 * 5 2 1 8 8 H 1.09001 * 115.54814 * 34.27521 * 7 5 2 9 9 C 1.52999 * 117.49511 * 248.60802 * 7 5 2 10 10 C 1.52993 * 117.49968 * 179.97438 * 7 5 2 11 11 H 1.08998 * 117.50025 * 214.97595 * 10 7 5 12 12 N 1.46506 * 117.49838 * 359.97438 * 10 7 5 13 13 C 1.36934 * 119.99810 * 204.99743 * 12 10 7 14 14 H 1.08004 * 120.00387 * 0.02562 * 13 12 10 15 15 C 1.38815 * 120.00030 * 179.97438 * 13 12 10 16 16 N 1.31612 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47288 * 60.00136 * 17 15 13 19 19 H 1.48498 * 109.46852 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47218 * 300.00007 * 17 15 13 21 21 H 1.09001 * 109.47002 * 154.27587 * 1 2 3 22 22 H 1.08993 * 109.46955 * 274.28024 * 1 2 3 23 23 H 1.09000 * 109.47050 * 34.27853 * 1 2 3 24 24 H 1.08998 * 117.49578 * 0.02562 * 4 2 1 25 25 H 1.09000 * 117.49788 * 145.01807 * 4 2 1 26 26 H 1.08995 * 117.50321 * 359.97438 * 9 7 5 27 27 H 1.09000 * 117.49516 * 145.01661 * 9 7 5 28 28 H 0.96992 * 119.99897 * 25.00299 * 12 10 7 29 29 H 0.97001 * 120.00209 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1207 -0.7653 5 6 2.2365 -1.1212 0.7646 6 1 3.1716 -0.8755 1.2680 7 6 1.3589 -2.1570 1.4703 8 1 0.4238 -2.4022 0.9668 9 6 1.3587 -2.1579 3.0003 10 6 2.0653 -3.2785 2.2345 11 1 1.5950 -4.2618 2.2338 12 7 3.5304 -3.2787 2.2340 13 6 4.2148 -4.4492 2.4251 14 1 3.6747 -5.3723 2.5757 15 6 5.6030 -4.4496 2.4241 16 7 6.2612 -3.3249 2.2401 17 14 6.5367 -6.0465 2.6841 18 1 6.1770 -7.0103 1.6131 19 1 7.9967 -5.7790 2.6399 20 1 6.1787 -6.6197 4.0064 21 1 -0.3633 -0.9258 -0.4461 22 1 -0.3633 0.0767 1.0247 23 1 -0.3633 0.8492 -0.5788 24 1 1.6113 -1.8578 -1.2692 25 1 3.1716 -0.8747 -1.2686 26 1 1.9841 -1.4209 3.5042 27 1 0.4236 -2.4041 3.5033 28 1 4.0154 -2.4498 2.0984 29 1 7.2312 -3.3252 2.2390 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716554574.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = 50.119440 kcal Electronic energy + Delta-G solvation = -10706.478214 eV Core-core repulsion = 8824.151258 eV Total energy + Delta-G solvation = -1882.326956 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.32344 -35.55475 -32.91937 -29.61759 -28.20258 -23.85356 -23.02303 -21.13691 -20.27431 -18.25190 -17.33726 -15.45217 -14.94240 -14.16148 -13.59234 -12.92404 -12.81323 -12.69579 -12.12058 -11.46167 -11.13137 -11.03775 -10.91889 -10.59190 -10.43566 -10.40191 -10.14108 -9.75095 -9.44919 -8.80051 -8.55981 -6.85346 -5.82287 -3.09359 3.42508 3.46735 3.48027 4.12915 4.54911 4.87380 5.09875 5.20874 5.42857 5.55109 5.57441 5.70826 5.89926 5.93066 6.00331 6.09328 6.18981 6.23427 6.25616 6.33352 6.50922 6.61614 6.78370 6.94342 6.99033 7.67142 8.36701 9.47352 10.04716 10.39150 11.39987 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.067006 B = 0.009759 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.775646 B = 2868.386255 C = 3086.096874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.167 4.167 3 H 0.095 0.905 4 C -0.171 4.171 5 C -0.092 4.092 6 H 0.103 0.897 7 C -0.165 4.165 8 H 0.090 0.910 9 C -0.226 4.226 10 C 0.153 3.847 11 H 0.100 0.900 12 N -0.684 5.684 13 C -0.248 4.248 14 H 0.074 0.926 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.912 3.088 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.388 0.612 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 4.079 -3.110 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.186 4.186 3 H 0.113 0.887 4 C -0.208 4.208 5 C -0.110 4.110 6 H 0.121 0.879 7 C -0.187 4.187 8 H 0.108 0.892 9 C -0.268 4.268 10 C 0.038 3.962 11 H 0.118 0.882 12 N -0.319 5.319 13 C -0.379 4.379 14 H 0.092 0.908 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.742 3.258 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.223 0.777 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.060 3.871 -3.084 10.324 hybrid contribution 0.720 -0.386 0.079 0.821 sum -8.340 3.485 -3.005 9.526 Atomic orbital electron populations 1.21263 0.93453 1.00965 1.01414 1.22352 0.95023 0.94330 1.06862 0.88679 1.22970 1.01902 1.00718 0.95226 1.21563 0.99519 0.97052 0.92916 0.87940 1.22222 1.00542 1.02893 0.93036 0.89161 1.23574 1.03055 1.07258 0.92890 1.20985 0.85339 0.91571 0.98290 0.88195 1.42003 0.98269 1.08805 1.82812 1.19281 0.89101 0.87499 1.41987 0.90837 1.24786 0.96372 0.97215 1.02297 1.69655 1.07104 1.25029 1.56069 0.86202 0.78855 0.82669 0.78065 1.21104 1.21630 1.21116 0.92840 0.92355 0.93172 0.89318 0.89325 0.89787 0.90296 0.77717 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.04 37.16 0.34 -1.12 15 2 C -0.17 -2.49 6.41 -90.62 -0.58 -3.07 15 3 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 4 C -0.17 -2.79 9.90 -26.73 -0.26 -3.05 15 5 C -0.09 -1.66 5.34 -90.62 -0.48 -2.14 15 6 H 0.10 2.08 6.87 -51.93 -0.36 1.73 15 7 C -0.17 -2.98 5.18 -90.62 -0.47 -3.45 15 8 H 0.09 1.48 7.19 -51.93 -0.37 1.11 15 9 C -0.23 -4.16 10.18 -26.72 -0.27 -4.43 15 10 C 0.15 3.22 6.60 -67.92 -0.45 2.77 15 11 H 0.10 2.01 8.12 -51.93 -0.42 1.59 15 12 N -0.68 -17.68 5.39 -53.41 -0.29 -17.96 15 13 C -0.25 -6.96 9.98 -15.06 -0.15 -7.11 15 14 H 0.07 1.98 7.82 -52.48 -0.41 1.57 15 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 15 16 N -0.93 -28.21 13.06 55.49 0.72 -27.48 15 17 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 15 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 15 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 21 H 0.05 0.67 7.40 -51.93 -0.38 0.29 15 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.09 1.39 8.05 -51.93 -0.42 0.97 15 25 H 0.09 1.43 8.14 -51.93 -0.42 1.00 15 26 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.39 10.54 6.34 -40.82 -0.26 10.28 15 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 246.40 15.07 3.71 3.71 Total: -1.00 -29.31 246.40 -7.60 -36.91 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.30 Total: 9.47 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.43 Total: -21.99 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.44 Total: -45.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.31 -7.60 -36.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716554574.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.029 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds