Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54737 * 2 1 4 4 C 1.53001 * 117.50076 * 214.32886 * 2 1 3 5 5 C 1.52995 * 117.49917 * 145.70562 * 2 1 3 6 6 H 1.08997 * 117.50034 * 214.97885 * 5 2 1 7 7 C 1.53007 * 117.50024 * 0.02562 * 5 2 1 8 8 H 1.09001 * 115.54814 * 34.27521 * 7 5 2 9 9 C 1.52999 * 117.49511 * 248.60802 * 7 5 2 10 10 C 1.52993 * 117.49968 * 179.97438 * 7 5 2 11 11 H 1.08998 * 117.50025 * 214.97595 * 10 7 5 12 12 N 1.46506 * 117.49838 * 359.97438 * 10 7 5 13 13 C 1.36934 * 119.99810 * 204.99743 * 12 10 7 14 14 H 1.08004 * 120.00387 * 0.02562 * 13 12 10 15 15 C 1.38815 * 120.00030 * 179.97438 * 13 12 10 16 16 N 1.31612 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47288 * 60.00136 * 17 15 13 19 19 H 1.48498 * 109.46852 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47218 * 300.00007 * 17 15 13 21 21 H 1.09001 * 109.47002 * 154.27587 * 1 2 3 22 22 H 1.08993 * 109.46955 * 274.28024 * 1 2 3 23 23 H 1.09000 * 109.47050 * 34.27853 * 1 2 3 24 24 H 1.08998 * 117.49578 * 0.02562 * 4 2 1 25 25 H 1.09000 * 117.49788 * 145.01807 * 4 2 1 26 26 H 1.08995 * 117.50321 * 359.97438 * 9 7 5 27 27 H 1.09000 * 117.49516 * 145.01661 * 9 7 5 28 28 H 0.96992 * 119.99897 * 25.00299 * 12 10 7 29 29 H 0.97001 * 120.00209 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1207 -0.7653 5 6 2.2365 -1.1212 0.7646 6 1 3.1716 -0.8755 1.2680 7 6 1.3589 -2.1570 1.4703 8 1 0.4238 -2.4022 0.9668 9 6 1.3587 -2.1579 3.0003 10 6 2.0653 -3.2785 2.2345 11 1 1.5950 -4.2618 2.2338 12 7 3.5304 -3.2787 2.2340 13 6 4.2148 -4.4492 2.4251 14 1 3.6747 -5.3723 2.5757 15 6 5.6030 -4.4496 2.4241 16 7 6.2612 -3.3249 2.2401 17 14 6.5367 -6.0465 2.6841 18 1 6.1770 -7.0103 1.6131 19 1 7.9967 -5.7790 2.6399 20 1 6.1787 -6.6197 4.0064 21 1 -0.3633 -0.9258 -0.4461 22 1 -0.3633 0.0767 1.0247 23 1 -0.3633 0.8492 -0.5788 24 1 1.6113 -1.8578 -1.2692 25 1 3.1716 -0.8747 -1.2686 26 1 1.9841 -1.4209 3.5042 27 1 0.4236 -2.4041 3.5033 28 1 4.0154 -2.4498 2.0984 29 1 7.2312 -3.3252 2.2390 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716554574.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = 33.107324 kcal Electronic energy + Delta-G solvation = -10707.215915 eV Core-core repulsion = 8824.151258 eV Total energy + Delta-G solvation = -1883.064657 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75956 -37.10484 -34.88124 -31.63322 -29.28801 -25.93986 -24.46404 -22.58184 -21.72368 -19.76092 -19.30357 -16.92638 -16.72134 -15.88608 -15.31441 -14.60268 -14.26517 -13.88677 -13.25642 -13.17516 -12.96227 -12.79398 -12.33847 -12.29654 -12.19090 -11.94798 -11.77599 -11.63686 -10.89492 -10.55249 -10.09253 -8.82426 -7.98373 -5.25645 1.46877 1.50515 1.56682 2.53901 2.76518 3.28039 3.55696 3.72920 3.88379 3.94797 4.20028 4.43598 4.47263 4.52552 4.57755 4.63780 4.95909 4.98396 5.03935 5.05796 5.24593 5.27185 5.35946 5.49848 5.50812 5.54986 6.23758 7.29087 8.05051 8.28484 9.25082 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.067006 B = 0.009759 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.775646 B = 2868.386255 C = 3086.096874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.140 4.140 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.125 4.125 6 H 0.068 0.932 7 C -0.136 4.136 8 H 0.117 0.883 9 C -0.208 4.208 10 C 0.111 3.889 11 H 0.108 0.892 12 N -0.703 5.703 13 C -0.251 4.251 14 H 0.082 0.918 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.980 3.020 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.276 1.276 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.375 0.625 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 3.923 -3.488 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 H 0.122 0.878 4 C -0.212 4.212 5 C -0.144 4.144 6 H 0.086 0.914 7 C -0.157 4.157 8 H 0.135 0.865 9 C -0.249 4.249 10 C 0.000 4.000 11 H 0.125 0.875 12 N -0.338 5.338 13 C -0.382 4.382 14 H 0.099 0.901 15 C -0.267 4.267 16 N -0.621 5.621 17 Si 0.808 3.192 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.202 1.202 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.208 0.792 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.065 3.708 -3.458 12.171 hybrid contribution 1.220 -0.281 0.185 1.266 sum -9.845 3.427 -3.273 10.926 Atomic orbital electron populations 1.21311 0.91196 1.02326 1.02167 1.22476 0.96585 0.93623 1.03117 0.87849 1.23040 1.02330 1.01971 0.93839 1.21493 0.99235 0.99744 0.93903 0.91396 1.22195 1.00319 1.00244 0.92967 0.86503 1.23529 1.03188 1.04542 0.93612 1.21312 0.83358 0.93336 1.02022 0.87463 1.42104 1.00264 1.07613 1.83852 1.19727 0.89681 0.88551 1.40281 0.90056 1.25640 0.97384 1.00464 1.03216 1.69826 1.06822 1.27216 1.58268 0.85123 0.76911 0.78840 0.78344 1.20137 1.22183 1.20187 0.92325 0.91995 0.90921 0.88338 0.89892 0.91358 0.87225 0.79165 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 9.04 71.98 0.65 -1.79 15 2 C -0.14 -3.84 6.41 -10.79 -0.07 -3.91 15 3 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 4 C -0.17 -5.48 9.90 30.59 0.30 -5.18 15 5 C -0.13 -4.43 5.34 -10.79 -0.06 -4.49 15 6 H 0.07 2.88 6.87 -2.39 -0.02 2.86 15 7 C -0.14 -4.66 5.18 -10.79 -0.06 -4.72 15 8 H 0.12 3.40 7.19 -2.39 -0.02 3.38 15 9 C -0.21 -7.29 10.18 30.60 0.31 -6.98 15 10 C 0.11 4.63 6.60 44.99 0.30 4.92 15 11 H 0.11 4.21 8.12 -2.39 -0.02 4.19 15 12 N -0.70 -37.07 5.39 -322.91 -1.74 -38.81 15 13 C -0.25 -14.26 9.98 84.03 0.84 -13.42 15 14 H 0.08 4.36 7.82 -2.91 -0.02 4.34 15 15 C -0.07 -4.37 5.50 84.86 0.47 -3.90 15 16 N -0.97 -60.60 13.06 21.65 0.28 -60.32 15 17 Si 0.98 46.49 29.55 68.60 2.03 48.52 15 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 19 H -0.30 -14.13 7.11 99.48 0.71 -13.43 15 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 21 H 0.06 1.22 7.40 -2.39 -0.02 1.21 15 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.10 2.87 8.05 -2.39 -0.02 2.85 15 25 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 28 H 0.38 21.27 6.34 -92.71 -0.59 20.68 15 29 H 0.25 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -63.36 246.40 3.79 -59.57 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.53 Total: 30.51 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 2.68 Total: -39.47 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -1.46 Total: -99.13 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -63.36 3.79 -59.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716554574.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -63.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds