Wall clock time and date at job start Mon Mar 30 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00009 * 2 1 4 4 H 1.08002 * 119.99969 * 156.21937 * 3 2 1 5 5 C 1.38808 * 120.00261 * 336.22280 * 3 2 1 6 6 N 1.31618 * 119.99641 * 330.46498 * 5 3 2 7 7 Si 1.86796 * 120.00317 * 150.46054 * 5 3 2 8 8 H 1.48500 * 109.47332 * 270.00084 * 7 5 3 9 9 H 1.48504 * 109.47015 * 29.99854 * 7 5 3 10 10 H 1.48501 * 109.47400 * 149.99822 * 7 5 3 11 11 C 1.46493 * 120.00119 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47102 * 270.00376 * 11 2 1 13 13 H 1.09003 * 115.55233 * 29.32274 * 12 11 2 14 14 C 1.53007 * 117.49700 * 243.61730 * 12 11 2 15 15 C 1.52988 * 59.99727 * 252.50883 * 14 12 11 16 16 C 1.52995 * 138.58798 * 130.89997 * 15 14 12 17 17 C 1.52997 * 60.00130 * 130.88647 * 16 15 14 18 18 H 1.09001 * 109.47066 * 92.98949 * 1 2 3 19 19 H 1.09000 * 109.47494 * 212.99144 * 1 2 3 20 20 H 1.08998 * 109.47352 * 332.99497 * 1 2 3 21 21 H 0.96999 * 120.00731 * 354.58465 * 6 5 3 22 22 H 1.08999 * 109.47323 * 29.99437 * 11 2 1 23 23 H 1.08994 * 109.47840 * 150.00227 * 11 2 1 24 24 H 1.08998 * 117.49807 * 0.02562 * 14 12 11 25 25 H 1.08999 * 117.49885 * 145.01733 * 14 12 11 26 26 H 1.09002 * 117.49662 * 238.37949 * 16 15 14 27 27 H 1.09003 * 117.49884 * 23.38945 * 16 15 14 28 28 H 1.09001 * 117.49937 * 252.50883 * 17 16 15 29 29 H 1.09000 * 117.51922 * 107.47878 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2256 0.3772 5 6 1.5440 2.3371 -0.4847 6 7 0.6307 2.2526 -1.4286 7 14 2.0252 4.0060 0.2028 8 1 1.1550 4.3340 1.3605 9 1 3.4428 3.9697 0.6437 10 1 1.8604 5.0410 -0.8493 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 1.7094 -1.3878 2.1710 14 6 3.9074 -1.7996 1.9068 15 6 3.1050 -3.0780 1.6566 16 6 3.2629 -4.4041 0.9102 17 6 2.7974 -4.3973 2.3676 18 1 -0.3633 -0.0536 -1.0263 19 1 -0.3634 -0.8619 0.5596 20 1 -0.3634 0.9156 0.4666 21 1 0.4368 1.3962 -1.8408 22 1 1.6084 -2.0281 -0.5146 23 1 3.1499 -1.1382 -0.5143 24 1 4.6829 -1.5424 1.1853 25 1 4.1219 -1.5346 2.9421 26 1 2.5226 -4.6431 0.1466 27 1 4.2765 -4.7498 0.7071 28 1 3.5048 -4.7385 3.1235 29 1 1.7510 -4.6315 2.5633 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722881718.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:50 Heat of formation + Delta-G solvation = 74.333581 kcal Electronic energy + Delta-G solvation = -10779.772652 eV Core-core repulsion = 8898.495699 eV Total energy + Delta-G solvation = -1881.276952 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.12912 -35.54079 -32.55964 -30.60864 -26.50803 -25.41798 -22.25423 -21.67028 -20.07207 -18.46898 -17.26044 -14.97794 -14.78919 -14.27935 -14.00381 -13.53601 -13.25916 -12.46209 -11.64676 -11.40335 -11.14293 -10.85438 -10.71119 -10.64748 -10.48927 -10.01136 -9.67988 -9.50375 -9.48187 -9.20614 -8.24770 -6.87158 -6.01503 -3.13697 3.55258 3.56808 3.73800 3.96116 4.10026 4.59751 4.70983 5.11580 5.27402 5.39776 5.59243 5.72369 5.85428 5.97008 6.04184 6.10823 6.12990 6.26791 6.32628 6.50018 6.51905 6.59193 6.90972 7.04310 7.14410 8.08105 8.63545 9.18778 9.93135 10.32502 11.26144 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.067401 B = 0.010157 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.326609 B = 2755.945543 C = 2991.606273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.603 5.603 3 C -0.355 4.355 4 H 0.058 0.942 5 C -0.023 4.023 6 N -0.914 5.914 7 Si 1.063 2.937 8 H -0.294 1.294 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.180 3.820 12 C -0.097 4.097 13 H 0.098 0.902 14 C -0.125 4.125 15 C -0.238 4.238 16 C -0.133 4.133 17 C -0.138 4.138 18 H 0.010 0.990 19 H 0.014 0.986 20 H 0.050 0.950 21 H 0.269 0.731 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -9.484 5.457 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.327 5.327 3 C -0.484 4.484 4 H 0.076 0.924 5 C -0.225 4.225 6 N -0.554 5.554 7 Si 0.893 3.107 8 H -0.221 1.221 9 H -0.219 1.219 10 H -0.217 1.217 11 C 0.053 3.947 12 C -0.117 4.117 13 H 0.116 0.884 14 C -0.162 4.162 15 C -0.238 4.238 16 C -0.170 4.170 17 C -0.174 4.174 18 H 0.028 0.972 19 H 0.032 0.968 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.229 -7.826 5.372 10.026 hybrid contribution 0.417 -1.675 0.192 1.737 sum 3.646 -9.501 5.564 11.598 Atomic orbital electron populations 1.20954 0.84110 0.98492 0.97509 1.43937 1.00912 1.01464 1.86340 1.19966 1.00862 0.87032 1.40523 0.92378 1.25751 0.99042 1.01959 0.95778 1.70749 1.36147 1.28242 1.20233 0.83556 0.75232 0.75981 0.75935 1.22130 1.21864 1.21745 1.20294 0.96055 0.87728 0.90612 1.23196 0.94954 0.92077 1.01518 0.88380 1.22709 0.95792 0.96404 1.01284 1.21631 1.09953 0.85545 1.06720 1.22517 1.01701 0.98038 0.94708 1.22560 1.01284 0.98439 0.95158 0.97245 0.96782 0.93080 0.91960 0.94539 0.93083 0.89014 0.89556 0.88987 0.89211 0.89309 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.33 8.98 59.84 0.54 3.87 15 2 N -0.60 -15.72 2.80 -181.13 -0.51 -16.23 15 3 C -0.36 -10.17 9.46 -15.06 -0.14 -10.32 15 4 H 0.06 1.68 7.98 -52.49 -0.42 1.26 15 5 C -0.02 -0.66 4.61 -17.43 -0.08 -0.74 15 6 N -0.91 -28.04 12.74 55.49 0.71 -27.33 15 7 Si 1.06 25.85 30.01 -169.99 -5.10 20.75 15 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 11 C 0.18 3.95 5.96 -4.04 -0.02 3.93 15 12 C -0.10 -1.86 6.01 -90.62 -0.54 -2.40 15 13 H 0.10 2.00 8.14 -51.93 -0.42 1.58 15 14 C -0.13 -2.13 10.18 -26.73 -0.27 -2.40 15 15 C -0.24 -3.83 5.39 -154.52 -0.83 -4.66 15 16 C -0.13 -1.80 10.53 -26.74 -0.28 -2.08 15 17 C -0.14 -1.82 10.53 -26.73 -0.28 -2.10 15 18 H 0.01 0.24 6.87 -51.93 -0.36 -0.11 15 19 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 15 20 H 0.05 1.35 7.27 -51.93 -0.38 0.97 15 21 H 0.27 8.33 6.37 -40.82 -0.26 8.07 15 22 H 0.04 0.76 8.07 -51.93 -0.42 0.34 15 23 H 0.05 1.15 7.77 -51.93 -0.40 0.74 15 24 H 0.09 1.55 8.03 -51.93 -0.42 1.14 15 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 247.84 15.07 3.73 3.73 Total: -1.00 -30.58 247.84 -7.49 -38.07 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.41 Total: -2.09 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.92 Total: -16.91 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.20 Total: -43.55 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.10 Total: 20.75 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.58 -7.49 -38.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722881718.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.405 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds