Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00009 * 2 1 4 4 H 1.08002 * 119.99969 * 156.21937 * 3 2 1 5 5 C 1.38808 * 120.00261 * 336.22280 * 3 2 1 6 6 N 1.31618 * 119.99641 * 330.46498 * 5 3 2 7 7 Si 1.86796 * 120.00317 * 150.46054 * 5 3 2 8 8 H 1.48500 * 109.47332 * 270.00084 * 7 5 3 9 9 H 1.48504 * 109.47015 * 29.99854 * 7 5 3 10 10 H 1.48501 * 109.47400 * 149.99822 * 7 5 3 11 11 C 1.46493 * 120.00119 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47102 * 270.00376 * 11 2 1 13 13 H 1.09003 * 115.55233 * 29.32274 * 12 11 2 14 14 C 1.53007 * 117.49700 * 243.61730 * 12 11 2 15 15 C 1.52988 * 59.99727 * 252.50883 * 14 12 11 16 16 C 1.52995 * 138.58798 * 130.89997 * 15 14 12 17 17 C 1.52997 * 60.00130 * 130.88647 * 16 15 14 18 18 H 1.09001 * 109.47066 * 92.98949 * 1 2 3 19 19 H 1.09000 * 109.47494 * 212.99144 * 1 2 3 20 20 H 1.08998 * 109.47352 * 332.99497 * 1 2 3 21 21 H 0.96999 * 120.00731 * 354.58465 * 6 5 3 22 22 H 1.08999 * 109.47323 * 29.99437 * 11 2 1 23 23 H 1.08994 * 109.47840 * 150.00227 * 11 2 1 24 24 H 1.08998 * 117.49807 * 0.02562 * 14 12 11 25 25 H 1.08999 * 117.49885 * 145.01733 * 14 12 11 26 26 H 1.09002 * 117.49662 * 238.37949 * 16 15 14 27 27 H 1.09003 * 117.49884 * 23.38945 * 16 15 14 28 28 H 1.09001 * 117.49937 * 252.50883 * 17 16 15 29 29 H 1.09000 * 117.51922 * 107.47878 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2256 0.3772 5 6 1.5440 2.3371 -0.4847 6 7 0.6307 2.2526 -1.4286 7 14 2.0252 4.0060 0.2028 8 1 1.1550 4.3340 1.3605 9 1 3.4428 3.9697 0.6437 10 1 1.8604 5.0410 -0.8493 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 1.7094 -1.3878 2.1710 14 6 3.9074 -1.7996 1.9068 15 6 3.1050 -3.0780 1.6566 16 6 3.2629 -4.4041 0.9102 17 6 2.7974 -4.3973 2.3676 18 1 -0.3633 -0.0536 -1.0263 19 1 -0.3634 -0.8619 0.5596 20 1 -0.3634 0.9156 0.4666 21 1 0.4368 1.3962 -1.8408 22 1 1.6084 -2.0281 -0.5146 23 1 3.1499 -1.1382 -0.5143 24 1 4.6829 -1.5424 1.1853 25 1 4.1219 -1.5346 2.9421 26 1 2.5226 -4.6431 0.1466 27 1 4.2765 -4.7498 0.7071 28 1 3.5048 -4.7385 3.1235 29 1 1.7510 -4.6315 2.5633 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722881718.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 57.360752 kcal Electronic energy + Delta-G solvation = -10780.508649 eV Core-core repulsion = 8898.495699 eV Total energy + Delta-G solvation = -1882.012949 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.49559 -37.44941 -34.10402 -32.51431 -28.40514 -27.45808 -23.59139 -23.27882 -21.67760 -19.80003 -19.38198 -16.61250 -16.17277 -15.82919 -15.68634 -15.42851 -15.03432 -14.29997 -13.41439 -12.97089 -12.79239 -12.48641 -12.45203 -12.31633 -12.12770 -11.88467 -11.56089 -10.96393 -10.76981 -10.69901 -10.33892 -9.00012 -8.27064 -5.38168 1.58434 1.65554 1.83841 2.63223 2.78249 2.82182 3.18603 3.37285 3.67254 3.93772 4.02536 4.51545 4.57217 4.63978 4.67797 4.73894 4.77215 4.83321 4.85165 4.92262 5.00377 5.07314 5.13656 5.27363 5.36137 5.84161 6.37425 7.04009 7.78359 8.17235 8.97801 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.067401 B = 0.010157 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.326609 B = 2755.945543 C = 2991.606273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.622 5.622 3 C -0.360 4.360 4 H 0.051 0.949 5 C -0.074 4.074 6 N -0.940 5.940 7 Si 1.114 2.886 8 H -0.284 1.284 9 H -0.273 1.273 10 H -0.293 1.293 11 C 0.184 3.816 12 C -0.119 4.119 13 H 0.083 0.917 14 C -0.124 4.124 15 C -0.246 4.246 16 C -0.126 4.126 17 C -0.119 4.119 18 H -0.003 1.003 19 H 0.045 0.955 20 H 0.026 0.974 21 H 0.255 0.745 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -10.654 6.676 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.346 5.346 3 C -0.489 4.489 4 H 0.069 0.931 5 C -0.271 4.271 6 N -0.582 5.582 7 Si 0.939 3.061 8 H -0.211 1.211 9 H -0.198 1.198 10 H -0.220 1.220 11 C 0.058 3.942 12 C -0.140 4.140 13 H 0.101 0.899 14 C -0.161 4.161 15 C -0.246 4.246 16 C -0.163 4.163 17 C -0.156 4.156 18 H 0.015 0.985 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.105 -9.040 6.606 11.925 hybrid contribution 0.164 -1.433 -0.194 1.455 sum 4.269 -10.473 6.412 13.001 Atomic orbital electron populations 1.20800 0.83701 0.98544 0.96915 1.44182 1.01504 1.02252 1.86634 1.20167 1.00863 0.88377 1.39503 0.93089 1.27138 0.98898 1.05515 0.95526 1.70880 1.37977 1.27389 1.21956 0.82872 0.76131 0.71792 0.75338 1.21074 1.19791 1.21980 1.20336 0.94978 0.86254 0.92639 1.22718 0.96223 0.96052 0.98999 0.89923 1.22703 0.94105 0.97506 1.01748 1.21697 1.07255 0.85613 1.10075 1.22729 1.03001 0.95263 0.95296 1.22767 1.02489 0.94865 0.95459 0.98522 0.93669 0.95507 0.93509 0.93760 0.94371 0.89405 0.88370 0.88604 0.87398 0.87122 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.30 8.98 127.77 1.15 8.45 15 2 N -0.62 -32.76 2.80 -726.97 -2.03 -34.79 15 3 C -0.36 -20.83 9.46 84.03 0.80 -20.04 15 4 H 0.05 2.97 7.98 -2.91 -0.02 2.95 15 5 C -0.07 -4.33 4.61 84.86 0.39 -3.94 15 6 N -0.94 -58.74 12.74 21.65 0.28 -58.46 15 7 Si 1.11 52.20 30.01 68.60 2.06 54.26 15 8 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 10 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 11 C 0.18 8.06 5.96 86.38 0.52 8.57 15 12 C -0.12 -4.50 6.01 -10.79 -0.06 -4.57 15 13 H 0.08 3.35 8.14 -2.39 -0.02 3.33 15 14 C -0.12 -4.05 10.18 30.59 0.31 -3.74 15 15 C -0.25 -7.32 5.39 -52.19 -0.28 -7.61 15 16 C -0.13 -2.99 10.53 30.59 0.32 -2.67 15 17 C -0.12 -2.69 10.53 30.59 0.32 -2.37 15 18 H 0.00 -0.17 6.87 -2.39 -0.02 -0.19 15 19 H 0.04 1.93 8.09 -2.39 -0.02 1.91 15 20 H 0.03 1.43 7.27 -2.39 -0.02 1.41 15 21 H 0.25 16.22 6.37 -92.71 -0.59 15.63 15 22 H 0.04 1.83 8.07 -2.39 -0.02 1.81 15 23 H 0.04 1.73 7.77 -2.39 -0.02 1.71 15 24 H 0.09 2.90 8.03 -2.39 -0.02 2.88 15 25 H 0.10 2.92 8.14 -2.39 -0.02 2.90 15 26 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -65.32 247.84 5.04 -60.28 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.28 Total: 6.62 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.46 Total: -27.90 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -1.76 Total: -93.26 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.06 Total: 54.26 kcal Total: -65.32 5.04 -60.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722881718.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.641 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds