Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99919 * 2 1 4 4 N 1.46499 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.35082 * 126.48612 * 0.14328 * 4 3 2 6 6 N 1.31007 * 109.64565 * 180.31579 * 5 4 3 7 7 C 1.33020 * 109.98323 * 359.72087 * 6 5 4 8 8 C 1.38430 * 126.48629 * 179.97438 * 4 3 2 9 9 C 1.40061 * 127.05924 * 359.96822 * 8 4 3 10 10 H 1.08003 * 120.00496 * 19.13203 * 9 8 4 11 11 C 1.40081 * 120.00079 * 199.13245 * 9 8 4 12 12 N 1.30852 * 119.99738 * 196.16569 * 11 9 8 13 13 Si 1.86795 * 119.99865 * 16.16500 * 11 9 8 14 14 H 1.48500 * 109.47298 * 270.00256 * 13 11 9 15 15 H 1.48508 * 109.47142 * 30.00127 * 13 11 9 16 16 H 1.48497 * 109.47219 * 149.99644 * 13 11 9 17 17 H 1.09000 * 109.47282 * 59.99591 * 1 2 3 18 18 H 1.08997 * 109.47744 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47021 * 300.00353 * 1 2 3 20 20 H 1.08997 * 109.47415 * 60.00382 * 3 2 1 21 21 H 1.09004 * 109.47123 * 299.99519 * 3 2 1 22 22 H 1.08001 * 125.17100 * 359.97438 * 5 4 3 23 23 H 1.08003 * 126.27333 * 180.02562 * 7 6 5 24 24 H 0.96993 * 120.00442 * 355.07225 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4706 1.1897 -0.0006 5 6 4.1856 0.0436 -0.0038 6 7 5.4655 0.3230 0.0034 7 6 5.6431 1.6412 0.0055 8 6 4.3791 2.2342 -0.0013 9 6 4.0896 3.6046 -0.0021 10 1 3.1135 3.9507 0.3042 11 6 5.0663 4.5265 -0.4004 12 7 4.9257 5.7947 -0.1104 13 14 6.5692 3.9453 -1.3453 14 1 7.6486 3.5909 -0.3890 15 1 6.2139 2.7523 -2.1551 16 1 7.0397 5.0306 -2.2429 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6886 1.8463 0.8900 21 1 1.6886 1.8463 -0.8901 22 1 3.7658 -0.9514 -0.0060 23 1 6.5913 2.1582 0.0108 24 1 4.1130 6.1075 0.3167 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080170.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -13.534145 kcal Electronic energy + Delta-G solvation = -10812.851511 eV Core-core repulsion = 8726.505323 eV Total energy + Delta-G solvation = -2086.346188 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.18883 -38.91321 -35.72342 -33.91257 -31.31398 -28.11883 -26.44005 -26.04063 -22.53007 -21.08975 -19.90961 -18.28014 -17.41759 -17.18096 -15.93483 -15.72968 -15.26210 -14.88377 -14.74513 -14.14420 -13.56688 -13.53594 -12.72209 -12.47248 -11.94672 -11.55523 -11.20287 -11.08321 -10.55313 -10.18574 -9.51318 -9.19127 -6.53054 1.17950 1.44900 1.68185 1.80944 1.82805 2.21011 2.45411 2.93250 3.07650 3.90220 4.08864 4.19130 4.41034 4.48146 4.55371 4.77297 4.90132 5.24523 5.35886 5.51549 6.03086 6.20708 6.37451 6.65742 6.86062 7.60502 8.02899 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.053214 B = 0.014347 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.052768 B = 1951.172212 C = 2364.012061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.411 6.411 3 C 0.310 3.690 4 N -0.504 5.504 5 C 0.110 3.890 6 N -0.502 5.502 7 C -0.218 4.218 8 C 0.171 3.829 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.029 3.971 12 N -0.840 5.840 13 Si 1.108 2.892 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.277 1.277 17 H 0.057 0.943 18 H 0.116 0.884 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.210 0.790 23 H 0.149 0.851 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -6.041 -1.260 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.331 6.331 3 C 0.149 3.851 4 N -0.198 5.198 5 C -0.167 4.167 6 N -0.220 5.220 7 C -0.362 4.362 8 C 0.058 3.942 9 C -0.569 4.569 10 H 0.078 0.922 11 C -0.186 4.186 12 N -0.465 5.465 13 Si 0.931 3.069 14 H -0.192 1.192 15 H -0.198 1.198 16 H -0.203 1.203 17 H 0.076 0.924 18 H 0.134 0.866 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.227 0.773 23 H 0.166 0.834 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.125 -6.239 -1.858 8.939 hybrid contribution -2.539 0.586 0.976 2.782 sum -8.664 -5.653 -0.883 10.383 Atomic orbital electron populations 1.23039 0.76573 1.05147 1.01570 1.87698 1.23439 1.26244 1.95684 1.21952 0.76903 0.85199 1.01055 1.45425 1.05999 1.07372 1.60970 1.24458 0.86415 0.92184 1.13674 1.69364 1.17469 1.16410 1.18748 1.22245 0.95728 0.90370 1.27881 1.19105 0.88033 0.88424 0.98649 1.19459 1.02367 0.89275 1.45796 0.92179 1.27826 1.04228 0.92721 0.93847 1.70644 1.27451 1.16562 1.31844 0.83131 0.72391 0.74805 0.76535 1.19180 1.19830 1.20323 0.92431 0.86591 0.92561 0.91735 0.91250 0.77324 0.83407 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 14 2 O -0.41 -12.63 9.87 -148.98 -1.47 -14.10 14 3 C 0.31 11.29 7.10 127.77 0.91 12.20 14 4 N -0.50 -23.59 3.20 -636.71 -2.03 -25.63 14 5 C 0.11 5.09 11.92 180.10 2.15 7.24 14 6 N -0.50 -26.19 11.18 -196.90 -2.20 -28.39 14 7 C -0.22 -11.82 9.32 84.85 0.79 -11.03 14 8 C 0.17 9.13 6.28 38.88 0.24 9.38 14 9 C -0.53 -29.17 9.46 23.16 0.22 -28.95 14 10 H 0.06 3.30 8.05 -2.91 -0.02 3.28 14 11 C 0.03 1.58 5.51 85.29 0.47 2.05 14 12 N -0.84 -45.59 13.66 21.86 0.30 -45.29 14 13 Si 1.11 51.16 24.94 68.60 1.71 52.87 14 14 H -0.27 -11.75 6.61 99.48 0.66 -11.10 14 15 H -0.27 -13.04 6.68 99.48 0.66 -12.37 14 16 H -0.28 -11.90 7.11 99.48 0.71 -11.20 14 17 H 0.06 0.98 8.14 -2.39 -0.02 0.96 14 18 H 0.12 1.67 8.14 -2.39 -0.02 1.65 14 19 H 0.06 0.96 8.14 -2.38 -0.02 0.94 14 20 H 0.06 2.25 8.14 -2.39 -0.02 2.24 14 21 H 0.07 2.42 8.14 -2.38 -0.02 2.40 14 22 H 0.21 8.10 7.76 -2.91 -0.02 8.08 14 23 H 0.15 7.80 4.32 -2.91 -0.01 7.79 14 24 H 0.28 14.83 8.73 -92.71 -0.81 14.02 14 Total: -1.00 -64.51 213.41 3.39 -61.11 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.06 Total: 6.68 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 6.03 Total: -7.24 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -3.94 Total: -99.31 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.47 Total: -14.10 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.71 Total: 52.87 kcal Total: -64.51 3.39 -61.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080170.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.577 kcal (2) G-P(sol) polarization free energy of solvation -64.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds