Wall clock time and date at job start Mon Mar 30 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 114.00030 * 2 1 4 4 N 1.46503 * 109.46814 * 179.97438 * 3 2 1 5 5 C 1.35960 * 126.11183 * 270.03898 * 4 3 2 6 6 N 1.30153 * 109.59554 * 179.69344 * 5 4 3 7 7 C 1.35971 * 109.13173 * 0.45000 * 6 5 4 8 8 C 1.41225 * 126.44399 * 179.81785 * 7 6 5 9 9 H 1.08003 * 120.00281 * 185.28017 * 8 7 6 10 10 C 1.39714 * 119.99740 * 5.01589 * 8 7 6 11 11 N 1.31016 * 120.00229 * 354.24971 * 10 8 7 12 12 Si 1.86801 * 120.00106 * 174.25499 * 10 8 7 13 13 H 1.48498 * 109.47192 * 94.97735 * 12 10 8 14 14 H 1.48500 * 109.46848 * 214.97752 * 12 10 8 15 15 H 1.48500 * 109.46944 * 334.97238 * 12 10 8 16 16 C 1.36101 * 126.10205 * 90.01066 * 4 3 2 17 17 H 1.08998 * 109.46533 * 299.99741 * 1 2 3 18 18 H 1.08992 * 109.47123 * 59.99681 * 1 2 3 19 19 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46447 * 60.00273 * 3 2 1 21 21 H 1.08991 * 109.47349 * 300.00400 * 3 2 1 22 22 H 1.07994 * 125.20364 * 359.94450 * 5 4 3 23 23 H 0.96993 * 120.00388 * 180.02562 * 11 10 8 24 24 H 1.07993 * 126.81774 * 0.04344 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1898 0.0006 5 6 4.2690 1.1259 1.0993 6 7 5.5126 1.0209 0.7299 7 6 5.5755 1.0222 -0.6284 8 6 6.7454 0.9293 -1.4141 9 1 6.6837 1.0259 -2.4880 10 6 7.9832 0.7179 -0.8016 11 7 8.0761 0.7183 0.5052 12 14 9.5058 0.4348 -1.8460 13 1 10.2197 1.7224 -2.0397 14 1 10.4030 -0.5306 -1.1616 15 1 9.1052 -0.1128 -3.1670 16 6 4.2706 1.1264 -1.0987 17 1 -0.3632 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 1.6886 1.8463 0.8901 21 1 1.6886 1.8465 -0.8899 22 1 3.9237 1.1536 2.1222 23 1 8.9354 0.5719 0.9304 24 1 3.9549 1.1521 -2.1311 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039080172.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:03 Heat of formation + Delta-G solvation = 21.210287 kcal Electronic energy + Delta-G solvation = -10542.488761 eV Core-core repulsion = 8457.649204 eV Total energy + Delta-G solvation = -2084.839557 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.92872 -37.45935 -33.32070 -31.48880 -28.39453 -27.00767 -25.32656 -23.94946 -19.78180 -19.44917 -17.15909 -16.45765 -15.74744 -15.31214 -14.70047 -13.73360 -13.00708 -12.89314 -12.37794 -12.26567 -11.90695 -11.37601 -11.03108 -10.81351 -10.19740 -9.87526 -9.66377 -9.12763 -8.07287 -7.99325 -6.94713 -6.14945 -3.93101 3.11696 3.29508 3.30723 3.36614 3.88172 4.27982 4.57019 4.74884 5.14439 5.20860 5.32800 5.36477 5.61266 5.88444 5.96258 6.47882 7.21578 7.29604 7.57378 7.83228 7.96563 8.48676 8.81420 9.18739 9.38300 10.05732 10.79718 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.102274 B = 0.009427 C = 0.008966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.709510 B = 2969.332259 C = 3122.039294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.408 6.408 3 C 0.293 3.707 4 N -0.468 5.468 5 C 0.148 3.852 6 N -0.453 5.453 7 C 0.197 3.803 8 C -0.455 4.455 9 H 0.075 0.925 10 C 0.075 3.925 11 N -0.774 5.774 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.228 4.228 17 H 0.040 0.960 18 H 0.040 0.960 19 H 0.085 0.915 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.174 0.826 23 H 0.266 0.734 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 0.891 -0.347 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.325 6.325 3 C 0.130 3.870 4 N -0.165 5.165 5 C -0.132 4.132 6 N -0.176 5.176 7 C 0.075 3.925 8 C -0.490 4.490 9 H 0.093 0.907 10 C -0.143 4.143 11 N -0.400 5.400 12 Si 0.727 3.273 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.190 1.190 16 C -0.353 4.353 17 H 0.059 0.941 18 H 0.059 0.941 19 H 0.104 0.896 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.191 0.809 23 H 0.076 0.924 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.509 0.645 0.335 9.536 hybrid contribution -0.341 0.076 -0.957 1.019 sum -9.850 0.721 -0.622 9.896 Atomic orbital electron populations 1.22611 0.80559 1.02780 0.99745 1.87979 1.19594 1.29686 1.95257 1.22118 0.80181 0.84235 1.00497 1.44783 1.03419 1.60373 1.07928 1.25049 0.87517 1.08680 0.91960 1.71220 1.14280 1.18799 1.13263 1.18486 0.90798 0.95336 0.87925 1.18467 0.89617 1.47541 0.93399 0.90685 1.25785 0.99826 0.93829 0.94890 1.70104 1.24801 1.36048 1.09067 0.86437 0.81643 0.78447 0.80768 1.20083 1.20616 1.19011 1.22300 0.91108 1.31943 0.89950 0.94113 0.94130 0.89635 0.91572 0.91658 0.80934 0.92369 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.57 14 2 O -0.41 -7.04 10.93 -35.23 -0.39 -7.42 14 3 C 0.29 4.96 6.93 59.85 0.41 5.38 14 4 N -0.47 -10.74 3.01 -122.56 -0.37 -11.11 14 5 C 0.15 3.64 12.52 -89.82 -1.12 2.51 14 6 N -0.45 -13.35 9.53 -11.99 -0.11 -13.47 14 7 C 0.20 5.86 6.68 -84.58 -0.57 5.29 14 8 C -0.46 -13.53 9.37 -37.90 -0.36 -13.88 14 9 H 0.07 2.10 7.85 -52.48 -0.41 1.69 14 10 C 0.07 2.13 5.49 -17.35 -0.10 2.04 14 11 N -0.77 -23.05 11.96 55.54 0.66 -22.39 14 12 Si 0.90 20.75 29.56 -169.99 -5.03 15.73 14 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 14 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 16 C -0.23 -5.96 11.63 -15.34 -0.18 -6.14 14 17 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 14 18 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 14 19 H 0.09 0.84 8.14 -51.93 -0.42 0.42 14 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 14 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 14 22 H 0.17 3.46 8.06 -52.49 -0.42 3.03 14 23 H 0.27 7.25 8.30 -40.82 -0.34 6.91 14 24 H 0.14 3.36 8.06 -52.49 -0.42 2.94 14 LS Contribution 222.93 15.07 3.36 3.36 Total: -1.00 -34.72 222.93 -5.17 -39.89 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.35 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.79 Total: -3.24 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.18 Total: -46.97 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.39 Total: -7.42 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -34.72 -5.17 -39.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080172.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.100 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds