Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 114.00030 * 2 1 4 4 N 1.46503 * 109.46814 * 179.97438 * 3 2 1 5 5 C 1.35960 * 126.11183 * 270.03898 * 4 3 2 6 6 N 1.30153 * 109.59554 * 179.69344 * 5 4 3 7 7 C 1.35971 * 109.13173 * 0.45000 * 6 5 4 8 8 C 1.41225 * 126.44399 * 179.81785 * 7 6 5 9 9 H 1.08003 * 120.00281 * 185.28017 * 8 7 6 10 10 C 1.39714 * 119.99740 * 5.01589 * 8 7 6 11 11 N 1.31016 * 120.00229 * 354.24971 * 10 8 7 12 12 Si 1.86801 * 120.00106 * 174.25499 * 10 8 7 13 13 H 1.48498 * 109.47192 * 94.97735 * 12 10 8 14 14 H 1.48500 * 109.46848 * 214.97752 * 12 10 8 15 15 H 1.48500 * 109.46944 * 334.97238 * 12 10 8 16 16 C 1.36101 * 126.10205 * 90.01066 * 4 3 2 17 17 H 1.08998 * 109.46533 * 299.99741 * 1 2 3 18 18 H 1.08992 * 109.47123 * 59.99681 * 1 2 3 19 19 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46447 * 60.00273 * 3 2 1 21 21 H 1.08991 * 109.47349 * 300.00400 * 3 2 1 22 22 H 1.07994 * 125.20364 * 359.94450 * 5 4 3 23 23 H 0.96993 * 120.00388 * 180.02562 * 11 10 8 24 24 H 1.07993 * 126.81774 * 0.04344 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1898 0.0006 5 6 4.2690 1.1259 1.0993 6 7 5.5126 1.0209 0.7299 7 6 5.5755 1.0222 -0.6284 8 6 6.7454 0.9293 -1.4141 9 1 6.6837 1.0259 -2.4880 10 6 7.9832 0.7179 -0.8016 11 7 8.0761 0.7183 0.5052 12 14 9.5058 0.4348 -1.8460 13 1 10.2197 1.7224 -2.0397 14 1 10.4030 -0.5306 -1.1616 15 1 9.1052 -0.1128 -3.1670 16 6 4.2706 1.1264 -1.0987 17 1 -0.3632 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 1.6886 1.8463 0.8901 21 1 1.6886 1.8465 -0.8899 22 1 3.9237 1.1536 2.1222 23 1 8.9354 0.5719 0.9304 24 1 3.9549 1.1521 -2.1311 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080172.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = -3.463163 kcal Electronic energy + Delta-G solvation = -10543.558682 eV Core-core repulsion = 8457.649204 eV Total energy + Delta-G solvation = -2085.909478 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.82529 -38.72783 -35.33348 -33.32430 -30.46327 -28.25131 -26.95690 -25.59099 -21.77087 -21.35764 -18.99667 -17.73013 -17.46545 -16.76691 -16.41520 -15.17245 -14.82691 -14.53253 -14.31710 -13.95768 -13.22593 -12.88622 -12.70585 -12.40447 -12.28499 -11.78992 -11.12898 -10.80155 -10.07802 -9.98868 -9.01772 -8.21933 -6.08722 1.31977 1.43271 1.57221 1.62198 2.23341 2.37694 2.66831 3.23954 3.72839 3.94768 4.04957 4.22619 4.46438 4.54808 4.59730 4.83135 5.25178 5.49461 5.85941 5.93373 6.08554 6.39389 6.90578 7.11195 7.29387 8.05689 8.75054 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.102274 B = 0.009427 C = 0.008966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.709510 B = 2969.332259 C = 3122.039294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.442 6.442 3 C 0.288 3.712 4 N -0.466 5.466 5 C 0.151 3.849 6 N -0.510 5.510 7 C 0.146 3.854 8 C -0.496 4.496 9 H 0.077 0.923 10 C 0.021 3.979 11 N -0.818 5.818 12 Si 0.985 3.015 13 H -0.265 1.265 14 H -0.273 1.273 15 H -0.259 1.259 16 C -0.221 4.221 17 H 0.064 0.936 18 H 0.057 0.943 19 H 0.096 0.904 20 H 0.104 0.896 21 H 0.086 0.914 22 H 0.215 0.785 23 H 0.270 0.730 24 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 1.012 -0.681 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.361 6.361 3 C 0.127 3.873 4 N -0.160 5.160 5 C -0.130 4.130 6 N -0.233 5.233 7 C 0.023 3.977 8 C -0.531 4.531 9 H 0.095 0.905 10 C -0.192 4.192 11 N -0.445 5.445 12 Si 0.806 3.194 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.183 1.183 16 C -0.348 4.348 17 H 0.082 0.918 18 H 0.076 0.924 19 H 0.114 0.886 20 H 0.122 0.878 21 H 0.104 0.896 22 H 0.231 0.769 23 H 0.079 0.921 24 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.883 0.775 0.001 10.911 hybrid contribution -0.217 0.049 -0.820 0.849 sum -11.100 0.823 -0.819 11.160 Atomic orbital electron populations 1.22919 0.77344 1.04250 1.01736 1.87903 1.22984 1.29552 1.95684 1.22528 0.76556 0.84809 1.03411 1.45002 1.06120 1.58505 1.06366 1.25692 0.86799 1.06673 0.93863 1.71093 1.17372 1.21292 1.13539 1.18992 0.92430 0.97467 0.88777 1.18858 0.91060 1.49437 0.93762 0.90520 1.26763 1.03172 0.93009 0.96287 1.70241 1.25853 1.37371 1.11051 0.85173 0.76747 0.78706 0.78734 1.18971 1.19831 1.18251 1.22544 0.90827 1.29941 0.91483 0.91755 0.92417 0.88560 0.87842 0.89603 0.76910 0.92062 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 14 2 O -0.44 -13.98 10.93 -148.98 -1.63 -15.61 14 3 C 0.29 8.79 6.93 127.77 0.89 9.68 14 4 N -0.47 -20.64 3.01 -642.13 -1.94 -22.58 14 5 C 0.15 7.28 12.52 180.07 2.25 9.53 14 6 N -0.51 -30.60 9.53 -191.86 -1.83 -32.43 14 7 C 0.15 8.91 6.68 39.44 0.26 9.17 14 8 C -0.50 -30.33 9.37 23.36 0.22 -30.11 14 9 H 0.08 4.41 7.85 -2.91 -0.02 4.39 14 10 C 0.02 1.24 5.49 85.17 0.47 1.71 14 11 N -0.82 -50.12 11.96 21.79 0.26 -49.86 14 12 Si 0.99 43.43 29.56 68.60 2.03 45.46 14 13 H -0.26 -11.11 7.11 99.48 0.71 -10.40 14 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 14 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 14 16 C -0.22 -11.52 11.63 84.24 0.98 -10.54 14 17 H 0.06 0.91 8.14 -2.39 -0.02 0.89 14 18 H 0.06 0.89 8.14 -2.39 -0.02 0.87 14 19 H 0.10 1.59 8.14 -2.39 -0.02 1.57 14 20 H 0.10 2.40 8.14 -2.39 -0.02 2.38 14 21 H 0.09 2.26 8.14 -2.39 -0.02 2.24 14 22 H 0.21 8.06 8.06 -2.91 -0.02 8.04 14 23 H 0.27 15.10 8.30 -92.71 -0.77 14.33 14 24 H 0.16 7.39 8.06 -2.91 -0.02 7.36 14 Total: -1.00 -77.53 222.93 4.40 -73.13 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.18 Total: 10.58 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 6.32 Total: -8.69 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.50 Total: -104.87 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.63 Total: -15.61 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.53 4.40 -73.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080172.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.665 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds