Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50707 * 109.47086 * 119.99925 * 2 1 3 5 5 N 1.30750 * 126.28265 * 119.70884 * 4 2 1 6 6 C 1.36355 * 105.50581 * 179.86460 * 5 4 2 7 7 C 1.41744 * 126.58363 * 180.13259 * 6 5 4 8 8 H 1.07998 * 119.99800 * 354.63675 * 7 6 5 9 9 C 1.39975 * 119.99745 * 174.64349 * 7 6 5 10 10 N 1.30745 * 120.00321 * 5.98362 * 9 7 6 11 11 Si 1.86803 * 119.99723 * 185.98926 * 9 7 6 12 12 H 1.48505 * 109.46840 * 94.97875 * 11 9 7 13 13 H 1.48496 * 109.46936 * 214.97781 * 11 9 7 14 14 H 1.48501 * 109.47062 * 334.97771 * 11 9 7 15 15 N 1.31863 * 106.82694 * 0.40316 * 6 5 4 16 16 O 1.21272 * 109.90184 * 359.75074 * 15 6 5 17 17 H 1.08993 * 109.47226 * 60.00027 * 1 2 3 18 18 H 1.09009 * 109.47224 * 300.00036 * 1 2 3 19 19 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46682 * 239.99849 * 2 1 3 21 21 H 1.09000 * 109.46943 * 60.00014 * 3 2 1 22 22 H 1.08997 * 109.46824 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46976 * 300.00118 * 3 2 1 24 24 H 0.96996 * 120.00143 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7828 -1.7809 1.2538 6 6 2.9842 -2.0562 2.5740 7 6 3.7425 -3.1286 3.1072 8 1 4.1582 -3.8762 2.4479 9 6 3.9522 -3.2186 4.4882 10 7 3.3537 -2.3830 5.2962 11 14 5.0876 -4.5326 5.1767 12 1 6.4463 -3.9636 5.3648 13 1 4.5632 -5.0046 6.4833 14 1 5.1556 -5.6740 4.2291 15 7 2.3334 -1.1367 3.2593 16 8 1.7875 -0.3650 2.4997 17 1 -0.3633 0.5138 -0.8899 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.6767 1.9563 0.8900 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 3.4994 -2.4452 6.2532 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495413.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = 39.361248 kcal Electronic energy + Delta-G solvation = -10778.842781 eV Core-core repulsion = 8694.790309 eV Total energy + Delta-G solvation = -2084.052472 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.15669 -35.41553 -34.30403 -32.70055 -29.45207 -26.93342 -26.42555 -22.86529 -21.75798 -19.88180 -16.95597 -16.00279 -15.61922 -15.09740 -14.40082 -13.77792 -12.98275 -12.88699 -11.97128 -11.66499 -11.32018 -11.21880 -11.01212 -10.88677 -10.69575 -10.30510 -10.15396 -9.99917 -9.18899 -8.97985 -8.02110 -6.58723 -4.58288 2.96024 3.07838 3.13787 3.19387 4.01360 4.11415 4.35772 5.04938 5.32038 5.42572 5.44312 5.75180 5.81754 6.04546 6.10447 6.17119 6.47097 6.56269 6.70384 7.06341 7.30789 7.84276 8.35563 8.58618 8.90325 10.37504 10.52061 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.101083 B = 0.010527 C = 0.010186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.933624 B = 2659.266618 C = 2748.204524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.009 3.991 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.524 5.524 6 C 0.287 3.713 7 C -0.435 4.435 8 H 0.091 0.909 9 C 0.070 3.930 10 N -0.774 5.774 11 Si 0.923 3.077 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.261 1.261 15 N -0.426 5.426 16 O 0.016 5.984 17 H 0.063 0.937 18 H 0.062 0.938 19 H 0.058 0.942 20 H 0.097 0.903 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 3.786 -6.299 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.012 4.012 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.264 5.264 6 C 0.035 3.965 7 C -0.476 4.476 8 H 0.109 0.891 9 C -0.151 4.151 10 N -0.403 5.403 11 Si 0.748 3.252 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.185 1.185 15 N -0.155 5.155 16 O -0.025 6.025 17 H 0.082 0.918 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.115 0.885 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.396 3.645 -5.450 6.980 hybrid contribution 0.527 -0.571 0.355 0.854 sum -1.868 3.074 -5.095 6.237 Atomic orbital electron populations 1.21832 0.93723 1.02450 1.02265 1.19413 0.95819 0.95052 0.90877 1.21830 1.01588 0.94585 1.02265 1.28013 0.97757 0.94326 0.89854 1.72178 1.18980 1.13967 1.21313 1.22464 0.95893 0.95857 0.82304 1.18404 1.30174 1.07167 0.91886 0.89126 1.25841 0.95715 0.96804 0.96736 1.69888 1.33797 1.32167 1.04436 0.86057 0.79985 0.80637 0.78551 1.19570 1.20246 1.18523 1.75578 1.20149 1.08214 1.11547 1.85163 1.57286 1.46254 1.13746 0.91821 0.91864 0.92330 0.88456 0.91859 0.92330 0.91826 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 37.16 0.34 -1.65 14 2 C 0.01 0.15 3.39 -91.77 -0.31 -0.17 14 3 C -0.14 -1.99 9.18 37.16 0.34 -1.65 14 4 C 0.12 2.88 6.98 -12.92 -0.09 2.79 14 5 N -0.52 -14.26 11.62 -10.83 -0.13 -14.39 14 6 C 0.29 8.69 7.70 -157.00 -1.21 7.48 14 7 C -0.44 -12.87 9.51 -37.59 -0.36 -13.22 14 8 H 0.09 2.55 7.85 -52.49 -0.41 2.13 14 9 C 0.07 1.93 5.49 -17.36 -0.10 1.84 14 10 N -0.77 -22.48 12.01 55.55 0.67 -21.81 14 11 Si 0.92 20.14 29.56 -169.99 -5.03 15.11 14 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 14 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 15 N -0.43 -12.92 10.51 30.27 0.32 -12.60 14 16 O 0.02 0.41 11.28 17.72 0.20 0.61 14 17 H 0.06 0.67 8.14 -51.93 -0.42 0.24 14 18 H 0.06 0.89 8.14 -51.92 -0.42 0.47 14 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 14 20 H 0.10 1.50 8.14 -51.93 -0.42 1.07 14 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 14 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 14 24 H 0.28 7.26 8.29 -40.82 -0.34 6.92 14 LS Contribution 220.85 15.07 3.33 3.33 Total: -1.00 -33.37 220.85 -4.52 -37.90 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -2.51 Total: -3.57 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.38 Total: -4.59 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.86 Total: -48.80 kcal Atomic # 8 Polarization: 0.41 SS G_CDS: 0.20 Total: 0.61 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -33.37 -4.52 -37.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495413.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.258 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds