Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50707 * 109.47086 * 119.99925 * 2 1 3 5 5 N 1.30750 * 126.28265 * 119.70884 * 4 2 1 6 6 C 1.36355 * 105.50581 * 179.86460 * 5 4 2 7 7 C 1.41744 * 126.58363 * 180.13259 * 6 5 4 8 8 H 1.07998 * 119.99800 * 354.63675 * 7 6 5 9 9 C 1.39975 * 119.99745 * 174.64349 * 7 6 5 10 10 N 1.30745 * 120.00321 * 5.98362 * 9 7 6 11 11 Si 1.86803 * 119.99723 * 185.98926 * 9 7 6 12 12 H 1.48505 * 109.46840 * 94.97875 * 11 9 7 13 13 H 1.48496 * 109.46936 * 214.97781 * 11 9 7 14 14 H 1.48501 * 109.47062 * 334.97771 * 11 9 7 15 15 N 1.31863 * 106.82694 * 0.40316 * 6 5 4 16 16 O 1.21272 * 109.90184 * 359.75074 * 15 6 5 17 17 H 1.08993 * 109.47226 * 60.00027 * 1 2 3 18 18 H 1.09009 * 109.47224 * 300.00036 * 1 2 3 19 19 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46682 * 239.99849 * 2 1 3 21 21 H 1.09000 * 109.46943 * 60.00014 * 3 2 1 22 22 H 1.08997 * 109.46824 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46976 * 300.00118 * 3 2 1 24 24 H 0.96996 * 120.00143 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7828 -1.7809 1.2538 6 6 2.9842 -2.0562 2.5740 7 6 3.7425 -3.1286 3.1072 8 1 4.1582 -3.8762 2.4479 9 6 3.9522 -3.2186 4.4882 10 7 3.3537 -2.3830 5.2962 11 14 5.0876 -4.5326 5.1767 12 1 6.4463 -3.9636 5.3648 13 1 4.5632 -5.0046 6.4833 14 1 5.1556 -5.6740 4.2291 15 7 2.3334 -1.1367 3.2593 16 8 1.7875 -0.3650 2.4997 17 1 -0.3633 0.5138 -0.8899 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.6767 1.9563 0.8900 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 3.4994 -2.4452 6.2532 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071495413.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = 14.649504 kcal Electronic energy + Delta-G solvation = -10779.914363 eV Core-core repulsion = 8694.790309 eV Total energy + Delta-G solvation = -2085.124053 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.27290 -36.85400 -36.40760 -34.74252 -31.47136 -28.62043 -28.03381 -24.51931 -23.90014 -21.68149 -18.89833 -18.11212 -17.70768 -16.71230 -16.17339 -15.25192 -14.80637 -14.08787 -13.41284 -13.24194 -13.04018 -12.99144 -12.48874 -12.40566 -12.29207 -12.09207 -11.94238 -11.83163 -11.19076 -11.10220 -10.14043 -8.66491 -6.81265 1.02062 1.34549 1.35833 1.54369 2.03793 2.18847 2.67832 3.18310 3.49439 4.10636 4.16936 4.36586 4.55638 4.82828 4.86149 4.95762 5.01395 5.17453 5.26115 5.36237 5.40040 5.77076 6.15125 6.44376 6.73722 8.32395 8.44476 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.101083 B = 0.010527 C = 0.010186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.933624 B = 2659.266618 C = 2748.204524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.006 3.994 3 C -0.139 4.139 4 C 0.145 3.855 5 N -0.556 5.556 6 C 0.255 3.745 7 C -0.472 4.472 8 H 0.093 0.907 9 C 0.021 3.979 10 N -0.813 5.813 11 Si 1.012 2.988 12 H -0.260 1.260 13 H -0.263 1.263 14 H -0.252 1.252 15 N -0.466 5.466 16 O 0.008 5.992 17 H 0.109 0.891 18 H 0.056 0.944 19 H 0.045 0.955 20 H 0.112 0.888 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 3.864 -7.147 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 C -0.197 4.197 4 C -0.077 4.077 5 N -0.296 5.296 6 C 0.004 3.996 7 C -0.513 4.513 8 H 0.111 0.889 9 C -0.196 4.196 10 N -0.442 5.442 11 Si 0.830 3.170 12 H -0.184 1.184 13 H -0.187 1.187 14 H -0.175 1.175 15 N -0.197 5.197 16 O -0.031 6.031 17 H 0.128 0.872 18 H 0.075 0.925 19 H 0.064 0.936 20 H 0.130 0.870 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.128 0.872 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.315 3.746 -6.330 7.711 hybrid contribution 0.420 -0.502 0.512 0.830 sum -1.895 3.244 -5.818 6.926 Atomic orbital electron populations 1.21842 0.91254 1.02322 1.04283 1.19946 0.97750 0.96072 0.87684 1.21840 1.00829 0.92752 1.04281 1.29433 0.94818 0.92836 0.90657 1.72160 1.21133 1.16043 1.20214 1.22994 0.96476 0.96560 0.83617 1.18859 1.31297 1.07706 0.93408 0.88920 1.27041 0.96976 0.99366 0.96201 1.69987 1.34958 1.34005 1.05259 0.84772 0.77281 0.76961 0.78002 1.18430 1.18737 1.17541 1.75539 1.21655 1.09258 1.13238 1.85064 1.57341 1.45813 1.14848 0.87193 0.92458 0.93571 0.86976 0.92459 0.93575 0.87194 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.18 71.98 0.66 -2.79 14 2 C 0.01 0.18 3.39 -11.54 -0.04 0.14 14 3 C -0.14 -3.45 9.18 71.98 0.66 -2.79 14 4 C 0.14 6.80 6.98 88.34 0.62 7.41 14 5 N -0.56 -30.93 11.62 -304.63 -3.54 -34.47 14 6 C 0.26 15.99 7.70 134.76 1.04 17.02 14 7 C -0.47 -28.64 9.51 23.56 0.22 -28.42 14 8 H 0.09 5.34 7.85 -2.91 -0.02 5.32 14 9 C 0.02 1.19 5.49 85.28 0.47 1.65 14 10 N -0.81 -48.06 12.01 21.83 0.26 -47.79 14 11 Si 1.01 41.12 29.56 68.60 2.03 43.15 14 12 H -0.26 -10.06 7.11 99.48 0.71 -9.36 14 13 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 14 15 N -0.47 -29.17 10.51 -60.23 -0.63 -29.80 14 16 O 0.01 0.44 11.28 73.47 0.83 1.27 14 17 H 0.11 1.76 8.14 -2.39 -0.02 1.74 14 18 H 0.06 1.49 8.14 -2.38 -0.02 1.47 14 19 H 0.05 1.25 8.14 -2.39 -0.02 1.23 14 20 H 0.11 3.15 8.14 -2.39 -0.02 3.13 14 21 H 0.06 1.50 8.14 -2.39 -0.02 1.48 14 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 14 23 H 0.11 1.76 8.14 -2.39 -0.02 1.74 14 24 H 0.29 15.15 8.29 -92.71 -0.77 14.38 14 Total: -1.00 -75.14 220.85 3.77 -71.37 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.19 Total: 4.02 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 3.63 Total: -7.76 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.91 Total: -112.06 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: 0.83 Total: 1.27 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -75.14 3.77 -71.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495413.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.024 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds