Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47143 * 2 1 4 4 C 1.50700 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.30748 * 126.28605 * 89.97347 * 4 3 2 6 6 C 1.36357 * 105.50998 * 179.97438 * 5 4 3 7 7 C 1.41739 * 126.58829 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.39976 * 120.00030 * 179.97438 * 7 6 5 10 10 N 1.30741 * 119.99805 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46783 * 90.00476 * 11 9 7 13 13 H 1.48505 * 109.47288 * 210.00066 * 11 9 7 14 14 H 1.48499 * 109.47474 * 330.00318 * 11 9 7 15 15 N 1.31870 * 106.82505 * 0.02562 * 6 5 4 16 16 O 1.21273 * 109.89785 * 359.97438 * 15 6 5 17 17 H 1.08996 * 109.46878 * 180.02562 * 1 2 3 18 18 H 1.08994 * 109.47179 * 300.00219 * 1 2 3 19 19 H 1.09005 * 109.46764 * 60.00552 * 1 2 3 20 20 H 1.09000 * 109.47611 * 239.99863 * 2 1 3 21 21 H 1.09006 * 109.47283 * 119.99525 * 2 1 3 22 22 H 1.08994 * 109.47262 * 59.99831 * 3 2 1 23 23 H 1.09005 * 109.46840 * 299.99401 * 3 2 1 24 24 H 0.97004 * 119.99641 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3212 1.4419 -1.0530 6 6 5.5959 1.4428 -0.5687 7 6 6.7899 1.4431 -1.3326 8 1 6.7406 1.4422 -2.4116 9 6 8.0327 1.4446 -0.6887 10 7 8.0922 1.4452 0.6173 11 14 9.6061 1.4442 -1.6955 12 1 10.0223 2.8443 -1.9639 13 1 10.6771 0.7457 -0.9402 14 1 9.3700 0.7426 -2.9828 15 7 5.5045 1.4434 0.7468 16 8 4.3383 1.4434 1.0795 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.8934 -0.5138 -0.8899 21 1 1.8934 -0.5138 0.8901 22 1 1.6767 1.9564 0.8899 23 1 1.6767 1.9563 -0.8901 24 1 8.9536 1.4459 1.0635 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641292.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = 12.242159 kcal Electronic energy + Delta-G solvation = -10592.738838 eV Core-core repulsion = 8507.510395 eV Total energy + Delta-G solvation = -2085.228444 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.26477 -36.60663 -36.29660 -34.73488 -32.14985 -28.77069 -28.05353 -23.90331 -23.20307 -22.04613 -19.21026 -18.09922 -17.76117 -16.54724 -16.04096 -15.60460 -14.85129 -14.18171 -13.47188 -13.26346 -13.11595 -12.91027 -12.59850 -12.27723 -12.22351 -12.06805 -11.94495 -11.57034 -11.16319 -11.11850 -10.13307 -8.65919 -6.81625 1.00793 1.35154 1.36241 1.54487 2.03930 2.19113 2.71069 3.19873 3.56654 4.11672 4.17688 4.40814 4.54523 4.72116 4.80630 5.00248 5.10426 5.19234 5.30742 5.34035 5.48794 5.76622 6.15010 6.44627 6.73694 8.32478 8.44335 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.106820 B = 0.009503 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 262.059209 B = 2945.624534 C = 3094.163582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.012 4.012 4 C 0.140 3.860 5 N -0.552 5.552 6 C 0.257 3.743 7 C -0.472 4.472 8 H 0.093 0.907 9 C 0.020 3.980 10 N -0.814 5.814 11 Si 1.012 2.988 12 H -0.258 1.258 13 H -0.264 1.264 14 H -0.253 1.253 15 N -0.466 5.466 16 O 0.004 5.996 17 H 0.065 0.935 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.050 0.950 21 H 0.058 0.942 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 -1.159 -1.248 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.051 4.051 4 C -0.083 4.083 5 N -0.292 5.292 6 C 0.005 3.995 7 C -0.512 4.512 8 H 0.111 0.889 9 C -0.197 4.197 10 N -0.443 5.443 11 Si 0.831 3.169 12 H -0.182 1.182 13 H -0.188 1.188 14 H -0.176 1.176 15 N -0.198 5.198 16 O -0.035 6.035 17 H 0.084 0.916 18 H 0.090 0.910 19 H 0.085 0.915 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.134 0.866 23 H 0.128 0.872 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.104 -1.157 -0.885 8.234 hybrid contribution 0.751 0.007 -0.173 0.771 sum -7.353 -1.151 -1.057 7.517 Atomic orbital electron populations 1.21696 0.91969 1.02868 1.03158 1.21484 0.98337 0.93889 1.01851 1.20341 0.78109 1.00357 1.06308 1.29436 0.99740 0.96842 0.82237 1.72143 1.01387 1.25669 1.30000 1.22989 0.92413 0.96757 0.87372 1.18871 0.87686 1.50302 0.94353 0.88856 1.27058 1.04603 0.91614 0.96450 1.69985 1.28769 1.34661 1.10852 0.84773 0.74138 0.79748 0.78289 1.18219 1.18822 1.17617 1.75546 0.93399 1.35475 1.15333 1.85086 1.12799 1.69398 1.36225 0.91583 0.91003 0.91527 0.93153 0.92352 0.86577 0.87212 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 71.98 0.71 -1.73 14 2 C -0.12 -3.05 5.92 30.59 0.18 -2.87 14 3 C -0.01 -0.37 5.84 29.85 0.17 -0.19 14 4 C 0.14 6.49 7.73 88.33 0.68 7.17 14 5 N -0.55 -30.38 11.62 -304.63 -3.54 -33.92 14 6 C 0.26 15.97 7.70 134.75 1.04 17.01 14 7 C -0.47 -28.49 9.52 23.56 0.22 -28.27 14 8 H 0.09 5.35 7.85 -2.91 -0.02 5.32 14 9 C 0.02 1.10 5.49 85.28 0.47 1.57 14 10 N -0.81 -48.04 11.98 21.83 0.26 -47.78 14 11 Si 1.01 40.98 29.56 68.60 2.03 43.01 14 12 H -0.26 -9.89 7.11 99.48 0.71 -9.19 14 13 H -0.26 -10.02 7.11 99.48 0.71 -9.32 14 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 14 15 N -0.47 -29.13 10.49 -60.21 -0.63 -29.76 14 16 O 0.00 0.19 11.28 73.48 0.83 1.02 14 17 H 0.07 1.04 8.14 -2.39 -0.02 1.02 14 18 H 0.07 1.05 8.14 -2.39 -0.02 1.03 14 19 H 0.07 1.04 8.14 -2.38 -0.02 1.02 14 20 H 0.05 1.49 8.14 -2.39 -0.02 1.47 14 21 H 0.06 1.61 8.14 -2.38 -0.02 1.59 14 22 H 0.12 2.76 8.14 -2.39 -0.02 2.74 14 23 H 0.11 2.91 8.14 -2.38 -0.02 2.90 14 24 H 0.29 15.15 8.29 -92.71 -0.77 14.38 14 Total: -1.00 -74.46 221.49 3.62 -70.84 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.19 Total: 3.91 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 3.48 Total: -7.31 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.91 Total: -111.46 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: 0.83 Total: 1.02 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -74.46 3.62 -70.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641292.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.079 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds