Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34950 * 126.03746 * 2 1 4 4 C 1.35314 * 107.74507 * 180.15046 * 3 2 1 5 5 C 1.50698 * 126.04035 * 179.87303 * 4 3 2 6 6 H 1.09009 * 109.47290 * 339.71305 * 5 4 3 7 7 O 1.42897 * 109.47461 * 219.71537 * 5 4 3 8 8 C 1.50702 * 109.47465 * 99.70934 * 5 4 3 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 5 13 13 H 1.48502 * 109.46964 * 270.27509 * 12 10 8 14 14 H 1.48505 * 109.47036 * 30.26897 * 12 10 8 15 15 H 1.48490 * 109.47395 * 150.27411 * 12 10 8 16 16 C 1.39870 * 107.92099 * 359.60741 * 4 3 2 17 17 N 1.30839 * 108.19982 * 0.24105 * 16 4 3 18 18 H 1.08994 * 109.46677 * 270.26312 * 1 2 3 19 19 H 1.09005 * 109.46818 * 30.26068 * 1 2 3 20 20 H 1.08996 * 109.46753 * 150.26201 * 1 2 3 21 21 H 1.07999 * 126.12883 * 359.97438 * 3 2 1 22 22 H 0.96706 * 113.99647 * 299.99872 * 7 5 4 23 23 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 24 24 H 1.07999 * 125.89855 * 180.22204 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5452 -0.0073 6 1 4.5002 2.5401 -0.3635 7 8 5.7569 0.9806 -0.8706 8 6 5.3199 1.6443 1.3915 9 1 4.8329 1.1227 2.2022 10 6 6.4463 2.4007 1.6363 11 7 7.0395 3.0355 0.6490 12 14 7.1259 2.5296 3.3715 13 1 6.4969 3.6822 4.0651 14 1 6.8245 1.2800 4.1152 15 1 8.5962 2.7290 3.3138 16 6 3.5347 -0.7321 0.0036 17 7 2.2892 -1.1327 0.0057 18 1 -0.3632 0.0047 1.0276 19 1 -0.3633 0.8877 -0.5179 20 1 -0.3633 -0.8923 -0.5098 21 1 1.9282 2.1193 -0.0004 22 1 6.0432 0.0935 -0.6134 23 1 6.6869 2.9682 -0.2522 24 1 4.4054 -1.3710 0.0064 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878313.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = 21.108058 kcal Electronic energy + Delta-G solvation = -10727.456629 eV Core-core repulsion = 8642.612640 eV Total energy + Delta-G solvation = -2084.843990 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.53303 -35.88404 -32.64754 -32.06212 -29.96936 -27.04065 -25.22135 -22.53957 -20.44728 -19.63346 -17.19408 -16.61825 -14.97330 -14.72128 -13.92694 -13.72582 -13.33559 -12.83560 -12.49862 -12.38190 -11.83970 -11.72814 -10.75367 -10.53047 -10.10270 -10.02309 -9.37176 -8.84530 -8.46934 -8.26201 -7.49653 -6.29063 -4.12996 2.44658 3.02338 3.44257 3.47207 3.56472 3.64802 4.56090 4.86828 5.28798 5.36798 5.44229 5.49550 5.62873 6.12776 6.24209 6.38294 6.69621 7.23397 7.53397 7.59275 8.06700 8.27222 8.43939 8.91368 9.15285 9.71479 11.08946 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.061096 B = 0.011596 C = 0.010842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.187261 B = 2413.945091 C = 2581.972376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.391 5.391 3 C 0.033 3.967 4 C -0.208 4.208 5 C 0.276 3.724 6 H 0.054 0.946 7 O -0.578 6.578 8 C -0.636 4.636 9 H 0.049 0.951 10 C 0.033 3.967 11 N -0.895 5.895 12 Si 1.069 2.931 13 H -0.288 1.288 14 H -0.289 1.289 15 H -0.284 1.284 16 C 0.055 3.945 17 N -0.315 5.315 18 H 0.066 0.934 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.166 0.834 22 H 0.354 0.646 23 H 0.284 0.716 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 -3.830 -0.315 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.176 5.176 3 C -0.111 4.111 4 C -0.220 4.220 5 C 0.218 3.782 6 H 0.071 0.929 7 O -0.382 6.382 8 C -0.674 4.674 9 H 0.067 0.933 10 C -0.175 4.175 11 N -0.530 5.530 12 Si 0.898 3.102 13 H -0.215 1.215 14 H -0.215 1.215 15 H -0.210 1.210 16 C -0.131 4.131 17 N -0.137 5.137 18 H 0.084 0.916 19 H 0.099 0.901 20 H 0.100 0.900 21 H 0.183 0.817 22 H 0.199 0.801 23 H 0.096 0.904 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.345 -3.556 0.259 10.002 hybrid contribution -0.840 -0.457 -0.434 1.050 sum -10.184 -4.013 -0.176 10.948 Atomic orbital electron populations 1.21657 0.75460 1.03613 1.02552 1.48304 1.05852 1.04046 1.59364 1.22176 0.91030 0.92771 1.05105 1.21432 0.96335 0.94713 1.09470 1.17947 0.80483 0.89683 0.90059 0.92878 1.86483 1.60759 1.34618 1.56386 1.22436 1.15399 1.35842 0.93694 0.93271 1.25798 0.93998 0.92521 1.05227 1.70613 1.40546 1.39318 1.02557 0.83565 0.76394 0.75989 0.74284 1.21524 1.21543 1.20977 1.23587 0.94536 0.95186 0.99771 1.77149 1.01942 1.08477 1.26106 0.91576 0.90116 0.90022 0.81678 0.80105 0.90419 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.85 0.69 1.97 14 2 N -0.39 -6.95 4.01 -68.16 -0.27 -7.22 14 3 C 0.03 0.63 11.40 -17.22 -0.20 0.44 14 4 C -0.21 -4.65 5.05 -105.05 -0.53 -5.18 14 5 C 0.28 7.09 2.88 -29.03 -0.08 7.01 14 6 H 0.05 1.44 8.01 -51.92 -0.42 1.03 14 7 O -0.58 -14.73 11.93 -35.23 -0.42 -15.15 14 8 C -0.64 -17.83 8.75 -34.44 -0.30 -18.13 14 9 H 0.05 1.40 7.74 -52.49 -0.41 1.00 14 10 C 0.03 0.94 5.40 -17.82 -0.10 0.84 14 11 N -0.90 -27.23 13.53 55.43 0.75 -26.48 14 12 Si 1.07 25.20 29.90 -169.99 -5.08 20.12 14 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 14 14 H -0.29 -6.56 7.11 56.52 0.40 -6.15 14 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 16 C 0.05 1.14 11.44 -17.36 -0.20 0.94 14 17 N -0.31 -6.29 12.58 30.62 0.39 -5.91 14 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 14 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 14 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 14 21 H 0.17 2.72 8.06 -52.49 -0.42 2.30 14 22 H 0.35 7.98 8.35 45.56 0.38 8.36 14 23 H 0.28 8.77 6.47 -40.82 -0.26 8.50 14 24 H 0.18 3.22 7.76 -52.49 -0.41 2.81 14 LS Contribution 220.47 15.07 3.32 3.32 Total: -1.00 -33.36 220.47 -3.64 -37.00 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.60 Total: 6.43 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.72 Total: -12.11 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.86 Total: -39.61 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.42 Total: -15.15 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -33.36 -3.64 -37.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878313.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.105 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds