Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34949 * 126.03345 * 2 1 4 4 C 1.35315 * 107.73907 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.03657 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47408 * 24.99433 * 5 4 3 7 7 O 1.42896 * 109.47646 * 144.99594 * 5 4 3 8 8 C 1.50708 * 109.46925 * 264.99426 * 5 4 3 9 9 H 1.07991 * 119.99789 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00008 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00089 * 180.02562 * 10 8 5 12 12 Si 1.86798 * 119.99938 * 0.02562 * 10 8 5 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.39862 * 107.92492 * 0.25833 * 4 3 2 17 17 N 1.30835 * 108.19988 * 359.55765 * 16 4 3 18 18 H 1.09003 * 109.47172 * 89.99992 * 1 2 3 19 19 H 1.08997 * 109.46962 * 210.00035 * 1 2 3 20 20 H 1.08998 * 109.47128 * 329.99862 * 1 2 3 21 21 H 1.08001 * 126.13173 * 359.95712 * 3 2 1 22 22 H 0.96704 * 114.00255 * 59.99269 * 7 5 4 23 23 H 0.96997 * 119.99848 * 180.02562 * 11 10 8 24 24 H 1.08000 * 125.89913 * 179.73784 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.5199 2.5138 0.4356 7 8 5.7981 0.9265 0.7745 8 6 5.2491 1.7377 -1.4139 9 1 4.7208 1.2708 -2.2319 10 6 6.3629 2.5107 -1.6643 11 7 6.7825 2.6791 -2.8993 12 14 7.2762 3.3190 -0.2493 13 1 6.7046 4.6661 0.0036 14 1 8.7139 3.4488 -0.5978 15 1 7.1361 2.4847 0.9712 16 6 3.5347 -0.7320 -0.0051 17 7 2.2892 -1.1327 0.0007 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5138 21 1 1.9281 2.1194 -0.0007 22 1 6.0698 0.0588 0.4452 23 1 7.5663 3.2226 -3.0754 24 1 4.4054 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878319.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = 7.081848 kcal Electronic energy + Delta-G solvation = -10736.633909 eV Core-core repulsion = 8651.181698 eV Total energy + Delta-G solvation = -2085.452212 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.98228 -37.75008 -34.37259 -33.90674 -31.69394 -29.02337 -27.25321 -24.14667 -21.84583 -21.03402 -19.34271 -17.94046 -16.76082 -16.16185 -16.01399 -15.40283 -15.01993 -14.79375 -13.84090 -13.58430 -13.43657 -13.29068 -12.90886 -12.54779 -12.30049 -11.51168 -11.12130 -10.77024 -10.28967 -10.19797 -9.09351 -8.28461 -6.42821 1.03073 1.45796 1.51389 1.80525 1.82571 1.99550 2.49841 3.08597 3.76891 4.12295 4.19251 4.41114 4.47959 4.68835 4.70265 4.82429 5.07138 5.53229 5.61064 5.79119 6.17558 6.28017 6.69682 6.81275 7.22923 7.40071 8.85908 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.069597 B = 0.011927 C = 0.011478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.221739 B = 2347.149379 C = 2438.858879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.384 5.384 3 C 0.047 3.953 4 C -0.251 4.251 5 C 0.272 3.728 6 H 0.062 0.938 7 O -0.580 6.580 8 C -0.549 4.549 9 H 0.026 0.974 10 C 0.025 3.975 11 N -0.944 5.944 12 Si 0.941 3.059 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.204 1.204 16 C 0.045 3.955 17 N -0.332 5.332 18 H 0.080 0.920 19 H 0.094 0.906 20 H 0.114 0.886 21 H 0.197 0.803 22 H 0.368 0.632 23 H 0.266 0.734 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -2.548 8.086 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.168 5.168 3 C -0.099 4.099 4 C -0.262 4.262 5 C 0.213 3.787 6 H 0.080 0.920 7 O -0.386 6.386 8 C -0.587 4.587 9 H 0.045 0.955 10 C -0.174 4.174 11 N -0.583 5.583 12 Si 0.765 3.235 13 H -0.208 1.208 14 H -0.226 1.226 15 H -0.126 1.126 16 C -0.140 4.140 17 N -0.155 5.155 18 H 0.098 0.902 19 H 0.113 0.887 20 H 0.132 0.868 21 H 0.214 0.786 22 H 0.216 0.784 23 H 0.075 0.925 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.791 -2.952 8.345 13.957 hybrid contribution 1.154 0.650 -0.636 1.469 sum -9.638 -2.302 7.710 12.555 Atomic orbital electron populations 1.22159 0.71983 1.05981 1.04276 1.48756 1.07798 1.03056 1.57141 1.22601 0.90483 0.94407 1.02363 1.21090 0.96322 0.95017 1.13822 1.17826 0.81655 0.90633 0.88623 0.92036 1.86590 1.57438 1.36990 1.57611 1.21736 1.12428 1.31426 0.93064 0.95532 1.25919 0.97627 0.95713 0.98120 1.70098 1.25773 1.40444 1.22008 0.85951 0.76218 0.78593 0.82706 1.20787 1.22593 1.12614 1.23819 0.95431 0.94950 0.99804 1.77106 1.01994 1.09740 1.26654 0.90174 0.88743 0.86756 0.78607 0.78364 0.92530 0.79323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 11.47 127.77 1.47 3.30 14 2 N -0.38 -12.26 4.01 -369.55 -1.48 -13.74 14 3 C 0.05 1.65 11.40 83.54 0.95 2.60 14 4 C -0.25 -10.35 5.09 -20.15 -0.10 -10.45 14 5 C 0.27 12.58 2.77 29.11 0.08 12.66 14 6 H 0.06 2.81 7.57 -2.39 -0.02 2.80 14 7 O -0.58 -25.40 10.03 -148.98 -1.49 -26.89 14 8 C -0.55 -30.98 9.33 25.60 0.24 -30.74 14 9 H 0.03 1.69 7.98 -2.92 -0.02 1.67 14 10 C 0.03 1.45 5.47 84.65 0.46 1.92 14 11 N -0.94 -58.89 13.96 21.45 0.30 -58.59 14 12 Si 0.94 44.59 26.99 68.60 1.85 46.44 14 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 14 14 H -0.30 -14.21 7.11 99.48 0.71 -13.51 14 15 H -0.20 -9.20 5.31 99.48 0.53 -8.67 14 16 C 0.04 1.74 11.40 85.23 0.97 2.71 14 17 N -0.33 -12.42 12.57 -57.03 -0.72 -13.14 14 18 H 0.08 1.38 8.14 -2.39 -0.02 1.36 14 19 H 0.09 1.60 8.14 -2.39 -0.02 1.58 14 20 H 0.11 1.46 8.14 -2.39 -0.02 1.45 14 21 H 0.20 5.45 8.06 -2.91 -0.02 5.43 14 22 H 0.37 14.24 8.24 -74.05 -0.61 13.63 14 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 14 24 H 0.19 6.45 7.65 -2.91 -0.02 6.42 14 Total: -1.00 -72.18 216.24 2.94 -69.24 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.42 Total: 14.68 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.07 Total: -18.01 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.90 Total: -85.47 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.49 Total: -26.89 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -72.18 2.94 -69.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878319.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.324 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds