Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35050 * 126.39303 * 2 1 4 4 N 1.30502 * 108.69734 * 180.26726 * 3 2 1 5 5 C 1.34126 * 109.25696 * 359.77329 * 4 3 2 6 6 C 1.34672 * 108.01879 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.58798 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47276 * 155.20872 * 7 6 5 9 9 O 1.42900 * 109.47377 * 35.20853 * 7 6 5 10 10 C 1.50700 * 109.47371 * 275.20316 * 7 6 5 11 11 H 1.08002 * 119.99845 * 0.02562 * 10 7 6 12 12 C 1.37883 * 120.00172 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99681 * 0.02562 * 12 10 7 14 14 Si 1.86791 * 120.00024 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47096 * 89.99971 * 14 12 10 16 16 H 1.48495 * 109.47272 * 210.00156 * 14 12 10 17 17 H 1.48502 * 109.47228 * 330.00115 * 14 12 10 18 18 H 1.08997 * 109.47379 * 274.39338 * 1 2 3 19 19 H 1.09002 * 109.47371 * 34.39163 * 1 2 3 20 20 H 1.09004 * 109.47161 * 154.39307 * 1 2 3 21 21 H 1.07995 * 125.65546 * 359.97438 * 3 2 1 22 22 H 1.08006 * 125.99031 * 180.02562 * 5 4 3 23 23 H 0.96698 * 114.00146 * 294.35597 * 9 7 6 24 24 H 0.97000 * 119.99524 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0058 5 6 3.5460 -0.6503 -0.0046 6 6 2.2772 -1.1017 0.0027 7 6 1.8364 -2.5427 0.0060 8 1 0.8403 -2.6170 0.4425 9 8 2.7540 -3.3198 0.7782 10 6 1.8048 -3.0617 -1.4085 11 1 2.0772 -2.4129 -2.2279 12 6 1.4283 -4.3647 -1.6565 13 7 1.0962 -5.1544 -0.6588 14 14 1.3898 -5.0081 -3.4097 15 1 2.7134 -5.5870 -3.7537 16 1 0.3448 -6.0563 -3.5295 17 1 1.0807 -3.8924 -4.3398 18 1 -0.3634 0.0787 1.0246 19 1 -0.3634 0.8480 -0.5805 20 1 -0.3634 -0.9268 -0.4442 21 1 1.9334 2.1145 -0.0004 22 1 4.4369 -1.2610 -0.0080 23 1 3.6424 -3.3703 0.3995 24 1 0.8309 -6.0710 -0.8334 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879687.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = 7.590181 kcal Electronic energy + Delta-G solvation = -10912.430125 eV Core-core repulsion = 8826.999956 eV Total energy + Delta-G solvation = -2085.430169 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.28452 -35.64590 -33.34700 -32.24354 -29.44929 -26.46718 -26.29032 -22.92914 -20.59842 -19.18858 -17.15187 -16.54011 -14.92361 -14.74477 -14.36921 -14.01124 -13.10694 -12.71872 -12.39713 -12.37850 -12.13894 -11.41235 -11.03445 -10.99193 -10.27589 -9.71016 -9.14480 -8.92098 -8.74353 -8.47452 -7.46831 -6.13728 -4.34034 2.84652 3.21852 3.29214 3.32575 3.49606 3.90555 4.31700 5.11918 5.21008 5.27341 5.54377 5.67901 5.84629 6.16303 6.33546 6.51221 6.83621 7.49410 7.60019 7.72404 7.90192 7.99284 8.69552 8.78416 9.22505 9.42800 10.88979 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052318 B = 0.013363 C = 0.012898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.055268 B = 2094.822407 C = 2170.318273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.458 5.458 3 C 0.141 3.859 4 N -0.499 5.499 5 C -0.055 4.055 6 C 0.006 3.994 7 C 0.295 3.705 8 H 0.062 0.938 9 O -0.555 6.555 10 C -0.565 4.565 11 H 0.059 0.941 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.273 1.273 18 H 0.068 0.932 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.193 0.807 22 H 0.161 0.839 23 H 0.354 0.646 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 6.784 -0.030 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.144 5.144 3 C -0.139 4.139 4 N -0.218 5.218 5 C -0.201 4.201 6 C -0.110 4.110 7 C 0.236 3.764 8 H 0.079 0.921 9 O -0.357 6.357 10 C -0.603 4.603 11 H 0.077 0.923 12 C -0.127 4.127 13 N -0.494 5.494 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.198 1.198 18 H 0.087 0.913 19 H 0.096 0.904 20 H 0.113 0.887 21 H 0.210 0.790 22 H 0.178 0.822 23 H 0.199 0.801 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.215 7.044 0.425 7.396 hybrid contribution -0.372 -0.709 -1.383 1.598 sum -2.586 6.335 -0.957 6.909 Atomic orbital electron populations 1.21955 0.77405 1.04842 1.02644 1.45186 1.07302 1.06826 1.55051 1.24603 0.86128 0.93133 1.10067 1.70091 1.19485 1.12584 1.19600 1.21758 0.96180 0.90423 1.11699 1.23274 0.91187 0.92412 1.04079 1.17818 0.89488 0.77355 0.91773 0.92078 1.86553 1.23350 1.73307 1.52441 1.21520 1.49372 0.97347 0.92088 0.92306 1.25055 0.93716 0.96698 0.97211 1.70071 1.41993 1.06686 1.30638 0.86558 0.78059 0.78669 0.84488 1.20258 1.21014 1.19811 0.91309 0.90411 0.88666 0.78985 0.82201 0.80127 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.90 59.84 0.65 1.74 14 2 N -0.46 -8.75 3.15 -121.37 -0.38 -9.14 14 3 C 0.14 2.57 12.56 -90.37 -1.14 1.43 14 4 N -0.50 -10.54 11.25 -14.66 -0.16 -10.71 14 5 C -0.05 -1.21 11.31 -17.81 -0.20 -1.41 14 6 C 0.01 0.14 5.95 -81.61 -0.49 -0.34 14 7 C 0.29 7.43 2.96 -29.04 -0.09 7.34 14 8 H 0.06 1.63 7.54 -51.92 -0.39 1.24 14 9 O -0.55 -14.22 12.57 -35.23 -0.44 -14.66 14 10 C -0.57 -15.15 8.70 -34.44 -0.30 -15.45 14 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 12 C 0.08 2.16 5.40 -17.82 -0.10 2.06 14 13 N -0.86 -24.34 12.84 55.43 0.71 -23.63 14 14 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 14 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 14 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 18 H 0.07 0.87 8.14 -51.93 -0.42 0.45 14 19 H 0.08 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.09 1.54 7.48 -51.93 -0.39 1.15 14 21 H 0.19 2.56 8.06 -52.49 -0.42 2.13 14 22 H 0.16 3.28 7.75 -52.48 -0.41 2.87 14 23 H 0.35 8.09 8.45 45.56 0.38 8.47 14 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 14 LS Contribution 220.05 15.07 3.32 3.32 Total: -1.00 -31.78 220.05 -5.25 -37.02 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -1.61 Total: 6.80 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.65 Total: -4.63 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.16 Total: -43.48 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.44 Total: -14.66 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.78 -5.25 -37.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879687.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.611 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds