Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35050 * 126.39303 * 2 1 4 4 N 1.30502 * 108.69734 * 180.26726 * 3 2 1 5 5 C 1.34126 * 109.25696 * 359.77329 * 4 3 2 6 6 C 1.34672 * 108.01879 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.58798 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47276 * 155.20872 * 7 6 5 9 9 O 1.42900 * 109.47377 * 35.20853 * 7 6 5 10 10 C 1.50700 * 109.47371 * 275.20316 * 7 6 5 11 11 H 1.08002 * 119.99845 * 0.02562 * 10 7 6 12 12 C 1.37883 * 120.00172 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99681 * 0.02562 * 12 10 7 14 14 Si 1.86791 * 120.00024 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47096 * 89.99971 * 14 12 10 16 16 H 1.48495 * 109.47272 * 210.00156 * 14 12 10 17 17 H 1.48502 * 109.47228 * 330.00115 * 14 12 10 18 18 H 1.08997 * 109.47379 * 274.39338 * 1 2 3 19 19 H 1.09002 * 109.47371 * 34.39163 * 1 2 3 20 20 H 1.09004 * 109.47161 * 154.39307 * 1 2 3 21 21 H 1.07995 * 125.65546 * 359.97438 * 3 2 1 22 22 H 1.08006 * 125.99031 * 180.02562 * 5 4 3 23 23 H 0.96698 * 114.00146 * 294.35597 * 9 7 6 24 24 H 0.97000 * 119.99524 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0058 5 6 3.5460 -0.6503 -0.0046 6 6 2.2772 -1.1017 0.0027 7 6 1.8364 -2.5427 0.0060 8 1 0.8403 -2.6170 0.4425 9 8 2.7540 -3.3198 0.7782 10 6 1.8048 -3.0617 -1.4085 11 1 2.0772 -2.4129 -2.2279 12 6 1.4283 -4.3647 -1.6565 13 7 1.0962 -5.1544 -0.6588 14 14 1.3898 -5.0081 -3.4097 15 1 2.7134 -5.5870 -3.7537 16 1 0.3448 -6.0563 -3.5295 17 1 1.0807 -3.8924 -4.3398 18 1 -0.3634 0.0787 1.0246 19 1 -0.3634 0.8480 -0.5805 20 1 -0.3634 -0.9268 -0.4442 21 1 1.9334 2.1145 -0.0004 22 1 4.4369 -1.2610 -0.0080 23 1 3.6424 -3.3703 0.3995 24 1 0.8309 -6.0710 -0.8334 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879687.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -15.151944 kcal Electronic energy + Delta-G solvation = -10913.416297 eV Core-core repulsion = 8826.999956 eV Total energy + Delta-G solvation = -2086.416341 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.83303 -37.62304 -34.80174 -34.30971 -31.21386 -28.30045 -27.68732 -24.86629 -22.10651 -20.83249 -19.18541 -18.08888 -16.76422 -16.36842 -16.17155 -15.69808 -14.89508 -14.28658 -14.17208 -13.70136 -13.49974 -13.30786 -12.96377 -12.83435 -12.13872 -11.56268 -10.92049 -10.84580 -10.47148 -10.30745 -9.14413 -8.18751 -6.47394 1.27516 1.39890 1.42871 1.52186 2.09361 2.28790 2.40264 3.05814 3.92098 4.05721 4.10546 4.28768 4.46133 4.61355 4.72146 4.83708 5.20280 5.58414 5.75130 5.85189 5.97267 6.50650 6.61853 7.19732 7.25751 7.39817 8.83387 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052318 B = 0.013363 C = 0.012898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.055268 B = 2094.822407 C = 2170.318273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.461 5.461 3 C 0.167 3.833 4 N -0.530 5.530 5 C -0.063 4.063 6 C -0.025 4.025 7 C 0.302 3.698 8 H 0.037 0.963 9 O -0.570 6.570 10 C -0.574 4.574 11 H 0.050 0.950 12 C 0.034 3.966 13 N -0.894 5.894 14 Si 0.962 3.038 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.270 1.270 18 H 0.089 0.911 19 H 0.120 0.880 20 H 0.071 0.929 21 H 0.246 0.754 22 H 0.162 0.838 23 H 0.363 0.637 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 8.156 -0.829 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.146 5.146 3 C -0.115 4.115 4 N -0.249 5.249 5 C -0.209 4.209 6 C -0.142 4.142 7 C 0.243 3.757 8 H 0.055 0.945 9 O -0.374 6.374 10 C -0.612 4.612 11 H 0.068 0.932 12 C -0.169 4.169 13 N -0.530 5.530 14 Si 0.787 3.213 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.194 1.194 18 H 0.107 0.893 19 H 0.138 0.862 20 H 0.090 0.910 21 H 0.262 0.738 22 H 0.179 0.821 23 H 0.209 0.791 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.742 8.417 -0.375 8.860 hybrid contribution -0.235 -1.037 -1.088 1.522 sum -2.976 7.380 -1.464 8.091 Atomic orbital electron populations 1.22244 0.74917 1.05485 1.04619 1.45433 1.08912 1.05996 1.54233 1.25638 0.85140 0.94703 1.05995 1.70110 1.21385 1.11791 1.21612 1.21913 0.96232 0.91308 1.11443 1.22777 0.92127 0.92123 1.07146 1.17484 0.88406 0.79222 0.90624 0.94538 1.86485 1.24061 1.73960 1.52854 1.21689 1.49227 0.97577 0.92681 0.93215 1.25826 0.93138 0.96826 1.01131 1.70179 1.42979 1.07066 1.32793 0.85512 0.78200 0.78057 0.79546 1.19819 1.20328 1.19410 0.89274 0.86191 0.91016 0.73762 0.82066 0.79098 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 10.90 127.77 1.39 3.23 14 2 N -0.46 -16.71 3.15 -537.91 -1.70 -18.41 14 3 C 0.17 5.50 12.56 180.26 2.26 7.77 14 4 N -0.53 -21.44 11.25 -200.30 -2.25 -23.70 14 5 C -0.06 -2.77 11.31 83.52 0.94 -1.82 14 6 C -0.03 -1.13 5.95 40.95 0.24 -0.89 14 7 C 0.30 15.51 2.96 29.10 0.09 15.60 14 8 H 0.04 2.03 7.54 -2.38 -0.02 2.01 14 9 O -0.57 -29.95 12.57 -148.98 -1.87 -31.82 14 10 C -0.57 -31.11 8.70 25.60 0.22 -30.88 14 11 H 0.05 2.73 7.74 -2.91 -0.02 2.71 14 12 C 0.03 1.86 5.40 84.66 0.46 2.31 14 13 N -0.89 -51.24 12.84 21.45 0.28 -50.97 14 14 Si 0.96 42.30 29.54 68.60 2.03 44.33 14 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 14 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 14 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 14 18 H 0.09 2.03 8.14 -2.39 -0.02 2.01 14 19 H 0.12 2.18 8.14 -2.39 -0.02 2.16 14 20 H 0.07 2.28 7.48 -2.38 -0.02 2.26 14 21 H 0.25 5.13 8.06 -2.91 -0.02 5.11 14 22 H 0.16 6.71 7.75 -2.91 -0.02 6.68 14 23 H 0.36 17.07 8.45 -74.06 -0.63 16.44 14 24 H 0.27 14.36 8.31 -92.71 -0.77 13.59 14 Total: -1.00 -68.01 220.05 2.67 -65.34 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.58 Total: 19.92 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.61 Total: -4.69 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -3.67 Total: -93.07 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.87 Total: -31.82 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -68.01 2.67 -65.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879687.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.185 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds