Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47429 * 2 1 4 4 C 1.38566 * 125.99515 * 89.97095 * 3 2 1 5 5 C 1.33159 * 107.86655 * 180.02562 * 4 3 2 6 6 N 1.38376 * 107.90849 * 0.02562 * 5 4 3 7 7 C 1.37285 * 125.95931 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00338 * 180.02562 * 7 6 5 9 9 C 1.38793 * 119.99652 * 359.74326 * 7 6 5 10 10 N 1.31465 * 120.00389 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99625 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47213 * 90.00405 * 11 9 7 13 13 H 1.48504 * 109.47159 * 210.00064 * 11 9 7 14 14 H 1.48501 * 109.47579 * 330.00515 * 11 9 7 15 15 C 1.34747 * 108.08100 * 0.23931 * 6 5 4 16 16 O 1.21713 * 125.93393 * 179.72239 * 15 6 5 17 17 H 1.08993 * 109.47239 * 300.00563 * 1 2 3 18 18 H 1.09003 * 109.46759 * 60.00331 * 1 2 3 19 19 H 1.08996 * 109.46977 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46973 * 239.99384 * 2 1 3 21 21 H 1.09003 * 109.46759 * 119.99668 * 2 1 3 22 22 H 1.07997 * 126.06924 * 359.97438 * 4 3 2 23 23 H 1.07994 * 126.04446 * 180.02562 * 5 4 3 24 24 H 0.96995 * 120.00190 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2894 2.1491 1.1211 5 6 2.7110 3.3423 0.7068 6 7 2.7089 3.3374 -0.6770 7 6 3.0775 4.3824 -1.4874 8 1 3.0383 4.2731 -2.5611 9 6 3.4950 5.5815 -0.9268 10 7 3.5380 5.7164 0.3802 11 14 3.9959 7.0037 -2.0295 12 1 2.8070 7.8428 -2.3259 13 1 5.0229 7.8261 -1.3409 14 1 4.5558 6.4730 -3.2984 15 6 2.2765 2.1300 -1.0903 16 8 2.1446 1.7762 -2.2473 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 1.8933 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 2.1777 1.8359 2.1486 23 1 3.0028 4.1679 1.3389 24 1 3.8301 6.5543 0.7720 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666401.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = 17.345413 kcal Electronic energy + Delta-G solvation = -10972.893189 eV Core-core repulsion = 8887.886039 eV Total energy + Delta-G solvation = -2085.007150 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.82444 -35.27902 -35.04362 -32.57011 -30.10412 -27.37663 -25.23288 -22.83975 -20.71251 -19.31731 -17.82749 -15.64105 -15.10475 -14.75230 -14.29688 -13.84807 -13.12078 -13.00117 -12.53395 -12.06485 -11.76431 -11.24768 -11.14680 -10.72639 -10.49214 -10.42454 -10.41311 -9.66571 -8.88408 -8.45425 -6.51982 -6.45470 -4.10491 3.10586 3.16372 3.22064 3.68756 3.72000 4.12988 4.21988 5.20594 5.27776 5.42107 5.64174 5.71055 5.96354 6.15832 6.39081 6.52549 6.95397 7.12369 7.34395 7.58471 7.91800 8.18505 8.75062 9.05068 9.30985 10.03702 10.53351 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.079310 B = 0.012742 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.962463 B = 2196.863897 C = 2452.883122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 N -0.531 5.531 4 C -0.139 4.139 5 C 0.041 3.959 6 N -0.361 5.361 7 C -0.301 4.301 8 H 0.109 0.891 9 C 0.031 3.969 10 N -0.878 5.878 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.267 1.267 15 C 0.590 3.410 16 O -0.622 6.622 17 H 0.057 0.943 18 H 0.059 0.941 19 H 0.061 0.939 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.155 0.845 23 H 0.209 0.791 24 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -3.931 3.838 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.253 5.253 4 C -0.261 4.261 5 C -0.090 4.090 6 N -0.062 5.062 7 C -0.429 4.429 8 H 0.126 0.874 9 C -0.172 4.172 10 N -0.516 5.516 11 Si 0.772 3.228 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.192 1.192 15 C 0.295 3.705 16 O -0.507 6.507 17 H 0.076 0.924 18 H 0.078 0.922 19 H 0.080 0.920 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.172 0.828 23 H 0.225 0.775 24 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.960 -3.996 3.094 5.420 hybrid contribution 0.172 0.639 -0.190 0.689 sum -1.787 -3.356 2.904 4.785 Atomic orbital electron populations 1.22153 0.96152 1.01428 1.02721 1.21156 0.94067 0.81081 1.02393 1.44999 1.60990 1.12392 1.06895 1.21398 1.20116 0.93169 0.91465 1.23319 1.02299 0.98351 0.85041 1.41187 1.48872 1.10249 1.05865 1.19726 1.42395 0.89474 0.91296 0.87353 1.25340 0.96432 0.98928 0.96493 1.69535 1.45742 1.26671 1.09616 0.85610 0.78430 0.79464 0.79339 1.19999 1.20430 1.19159 1.16251 0.87221 0.82521 0.84483 1.90786 1.66680 1.76543 1.16683 0.92427 0.92174 0.91992 0.90443 0.90715 0.82772 0.77544 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 14 2 C 0.14 2.38 6.75 -4.04 -0.03 2.36 14 3 N -0.53 -12.13 2.77 -121.39 -0.34 -12.47 14 4 C -0.14 -3.00 11.50 -16.27 -0.19 -3.18 14 5 C 0.04 1.04 10.30 -16.36 -0.17 0.87 14 6 N -0.36 -10.23 2.90 -66.32 -0.19 -10.42 14 7 C -0.30 -8.66 10.03 -14.90 -0.15 -8.81 14 8 H 0.11 3.16 7.79 -52.49 -0.41 2.75 14 9 C 0.03 0.81 5.48 -17.50 -0.10 0.72 14 10 N -0.88 -22.89 10.11 55.49 0.56 -22.33 14 11 Si 0.95 20.38 29.55 -169.99 -5.02 15.36 14 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 15 C 0.59 16.50 8.46 -86.96 -0.74 15.77 14 16 O -0.62 -18.98 17.62 5.18 0.09 -18.89 14 17 H 0.06 0.86 8.14 -51.93 -0.42 0.43 14 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 14 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 14 20 H 0.08 1.39 8.08 -51.93 -0.42 0.97 14 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 14 22 H 0.15 2.66 8.06 -52.49 -0.42 2.24 14 23 H 0.21 5.19 5.48 -52.49 -0.29 4.91 14 24 H 0.27 6.60 8.31 -40.82 -0.34 6.26 14 LS Contribution 217.30 15.07 3.27 3.27 Total: -1.00 -32.00 217.30 -4.97 -36.98 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.36 Total: 2.97 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.98 Total: 5.54 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.03 Total: -45.22 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.09 Total: -18.89 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -32.00 -4.97 -36.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666401.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.324 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds