Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47429 * 2 1 4 4 C 1.38566 * 125.99515 * 89.97095 * 3 2 1 5 5 C 1.33159 * 107.86655 * 180.02562 * 4 3 2 6 6 N 1.38376 * 107.90849 * 0.02562 * 5 4 3 7 7 C 1.37285 * 125.95931 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00338 * 180.02562 * 7 6 5 9 9 C 1.38793 * 119.99652 * 359.74326 * 7 6 5 10 10 N 1.31465 * 120.00389 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99625 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47213 * 90.00405 * 11 9 7 13 13 H 1.48504 * 109.47159 * 210.00064 * 11 9 7 14 14 H 1.48501 * 109.47579 * 330.00515 * 11 9 7 15 15 C 1.34747 * 108.08100 * 0.23931 * 6 5 4 16 16 O 1.21713 * 125.93393 * 179.72239 * 15 6 5 17 17 H 1.08993 * 109.47239 * 300.00563 * 1 2 3 18 18 H 1.09003 * 109.46759 * 60.00331 * 1 2 3 19 19 H 1.08996 * 109.46977 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46973 * 239.99384 * 2 1 3 21 21 H 1.09003 * 109.46759 * 119.99668 * 2 1 3 22 22 H 1.07997 * 126.06924 * 359.97438 * 4 3 2 23 23 H 1.07994 * 126.04446 * 180.02562 * 5 4 3 24 24 H 0.96995 * 120.00190 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2894 2.1491 1.1211 5 6 2.7110 3.3423 0.7068 6 7 2.7089 3.3374 -0.6770 7 6 3.0775 4.3824 -1.4874 8 1 3.0383 4.2731 -2.5611 9 6 3.4950 5.5815 -0.9268 10 7 3.5380 5.7164 0.3802 11 14 3.9959 7.0037 -2.0295 12 1 2.8070 7.8428 -2.3259 13 1 5.0229 7.8261 -1.3409 14 1 4.5558 6.4730 -3.2984 15 6 2.2765 2.1300 -1.0903 16 8 2.1446 1.7762 -2.2473 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 1.8933 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 2.1777 1.8359 2.1486 23 1 3.0028 4.1679 1.3389 24 1 3.8301 6.5543 0.7720 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666401.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -3.359291 kcal Electronic energy + Delta-G solvation = -10973.791012 eV Core-core repulsion = 8887.886039 eV Total energy + Delta-G solvation = -2085.904973 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.75916 -37.36862 -36.87932 -34.40813 -31.85987 -29.18268 -27.24736 -24.39263 -22.62912 -21.16083 -19.83784 -17.57796 -17.00603 -16.64025 -16.02248 -15.65448 -15.03225 -14.60888 -14.08216 -13.87098 -13.28480 -13.09642 -12.80616 -12.55956 -12.41993 -12.11892 -12.03331 -11.46561 -10.99726 -10.40598 -8.45593 -8.44117 -6.22332 1.38549 1.38959 1.53199 1.86520 1.95350 2.19153 2.32953 3.13581 3.49119 4.00254 4.29446 4.45015 4.62711 4.75936 4.95182 5.03510 5.22886 5.27628 5.31429 5.65577 6.08462 6.18528 6.76335 7.02626 7.32692 7.98806 8.52800 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.079310 B = 0.012742 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.962463 B = 2196.863897 C = 2452.883122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.523 5.523 4 C -0.090 4.090 5 C -0.008 4.008 6 N -0.375 5.375 7 C -0.356 4.356 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.885 5.885 11 Si 1.015 2.985 12 H -0.266 1.266 13 H -0.259 1.259 14 H -0.272 1.272 15 C 0.552 3.448 16 O -0.670 6.670 17 H 0.067 0.933 18 H 0.024 0.976 19 H 0.102 0.898 20 H 0.066 0.934 21 H 0.123 0.877 22 H 0.212 0.788 23 H 0.205 0.795 24 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -4.086 5.737 7.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.242 5.242 4 C -0.213 4.213 5 C -0.137 4.137 6 N -0.076 5.076 7 C -0.483 4.483 8 H 0.102 0.898 9 C -0.199 4.199 10 N -0.521 5.521 11 Si 0.835 3.165 12 H -0.191 1.191 13 H -0.183 1.183 14 H -0.197 1.197 15 C 0.257 3.743 16 O -0.560 6.560 17 H 0.086 0.914 18 H 0.043 0.957 19 H 0.121 0.879 20 H 0.085 0.915 21 H 0.141 0.859 22 H 0.229 0.771 23 H 0.221 0.779 24 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.053 -4.184 5.069 6.885 hybrid contribution 0.181 0.628 -0.646 0.919 sum -1.872 -3.555 4.423 5.975 Atomic orbital electron populations 1.22096 0.94323 1.03738 1.01407 1.21683 0.95602 0.78326 1.04228 1.45315 1.59293 1.13862 1.05711 1.22204 1.14774 0.91256 0.93090 1.23474 1.05965 1.00379 0.83903 1.41387 1.48832 1.10302 1.07116 1.19788 1.46172 0.91422 0.90887 0.89781 1.26265 0.94989 1.00466 0.98193 1.69599 1.44227 1.27704 1.10536 0.84639 0.78616 0.75915 0.77284 1.19054 1.18284 1.19655 1.16663 0.89091 0.83366 0.85185 1.90701 1.69081 1.77537 1.18675 0.91438 0.95687 0.87890 0.91542 0.85922 0.77099 0.77884 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 14 2 C 0.12 3.96 6.75 86.38 0.58 4.54 14 3 N -0.52 -23.22 2.77 -656.17 -1.82 -25.04 14 4 C -0.09 -3.64 11.50 82.48 0.95 -2.69 14 5 C -0.01 -0.39 10.30 82.52 0.85 0.46 14 6 N -0.38 -21.91 2.90 -481.95 -1.40 -23.30 14 7 C -0.36 -21.30 10.03 83.97 0.84 -20.46 14 8 H 0.08 5.24 7.79 -2.91 -0.02 5.22 14 9 C 0.00 0.17 5.48 84.88 0.46 0.64 14 10 N -0.88 -45.75 10.11 21.64 0.22 -45.53 14 11 Si 1.01 41.62 29.55 68.60 2.03 43.65 14 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 14 13 H -0.26 -9.73 7.11 99.48 0.71 -9.03 14 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 14 15 C 0.55 31.80 8.46 179.07 1.51 33.31 14 16 O -0.67 -43.04 17.62 -4.39 -0.08 -43.12 14 17 H 0.07 1.76 8.14 -2.39 -0.02 1.74 14 18 H 0.02 0.86 8.14 -2.39 -0.02 0.84 14 19 H 0.10 2.06 8.14 -2.39 -0.02 2.04 14 20 H 0.07 2.31 8.08 -2.39 -0.02 2.29 14 21 H 0.12 2.84 8.14 -2.39 -0.02 2.82 14 22 H 0.21 6.03 8.06 -2.91 -0.02 6.00 14 23 H 0.21 10.15 5.48 -2.91 -0.02 10.13 14 24 H 0.28 13.32 8.31 -92.71 -0.77 12.55 14 Total: -1.00 -73.09 217.30 6.08 -67.00 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.19 Total: 14.23 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.94 Total: 12.11 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -3.00 Total: -93.87 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.08 Total: -43.12 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -73.09 6.08 -67.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666401.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.645 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds