Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38703 * 125.98278 * 2 1 4 4 C 1.32859 * 107.91431 * 180.02562 * 3 2 1 5 5 N 1.38697 * 107.91712 * 359.97438 * 4 3 2 6 6 C 1.46500 * 125.98339 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47180 * 89.97435 * 6 5 4 8 8 H 1.07997 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99963 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99839 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47383 * 60.00552 * 11 9 7 13 13 H 1.48499 * 109.47264 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47589 * 300.00318 * 11 9 7 15 15 C 1.34756 * 108.03012 * 359.74145 * 5 4 3 16 16 O 1.21796 * 125.94579 * 180.26562 * 15 5 4 17 17 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46813 * 240.02618 * 1 2 3 19 19 H 1.09004 * 109.47041 * 120.02745 * 1 2 3 20 20 H 1.07996 * 126.04030 * 359.97438 * 3 2 1 21 21 H 1.08004 * 126.04027 * 179.97438 * 4 3 2 22 22 H 1.09005 * 109.46782 * 209.97566 * 6 5 4 23 23 H 1.09001 * 109.47148 * 329.97017 * 6 5 4 24 24 H 0.96996 * 119.99639 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1224 0.0000 4 6 3.5430 0.7103 -0.0006 5 7 3.5393 -0.6767 -0.0003 6 6 4.7225 -1.5406 -0.0003 7 6 5.1287 -1.8360 1.4205 8 1 4.5619 -1.4221 2.2414 9 6 6.2233 -2.6357 1.6725 10 7 6.9132 -3.1402 0.6729 11 14 6.7262 -3.0025 3.4337 12 1 5.6114 -3.6894 4.1341 13 1 7.9256 -3.8781 3.4338 14 1 7.0419 -1.7314 4.1334 15 6 2.2569 -1.0904 0.0062 16 8 1.8792 -2.2483 0.0128 17 1 -0.3634 1.0277 -0.0005 18 1 -0.3633 -0.5134 0.8902 19 1 -0.3633 -0.5143 -0.8898 20 1 1.9466 2.1496 -0.0004 21 1 4.4180 1.3435 -0.0011 22 1 4.4909 -2.4739 -0.5136 23 1 5.5406 -1.0363 -0.5147 24 1 7.6834 -3.7024 0.8503 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666410.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 16.616136 kcal Electronic energy + Delta-G solvation = -10773.490486 eV Core-core repulsion = 8688.451712 eV Total energy + Delta-G solvation = -2085.038774 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.34637 -35.83990 -34.75896 -32.67392 -29.65872 -27.10618 -26.08679 -23.00047 -21.02851 -19.58640 -16.85635 -16.53678 -15.41416 -14.91134 -14.39151 -14.18296 -13.35284 -13.11989 -12.77634 -12.24614 -12.06235 -11.40915 -11.14331 -10.83470 -10.70086 -10.22762 -9.91133 -9.39012 -8.77639 -8.51788 -6.93311 -6.12758 -4.19416 2.90717 3.12586 3.30134 3.33866 3.38396 3.83536 4.33530 4.46080 5.14834 5.21654 5.58665 5.59529 5.78010 6.00479 6.20908 6.47327 7.13296 7.17533 7.36840 7.69325 7.87352 8.06661 8.34478 8.82024 9.23744 9.47271 10.94806 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.065282 B = 0.011249 C = 0.011067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.803716 B = 2488.526123 C = 2529.504834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.547 5.547 3 C -0.061 4.061 4 C 0.018 3.982 5 N -0.511 5.511 6 C 0.257 3.743 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.905 3.095 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.640 3.360 16 O -0.581 6.581 17 H 0.078 0.922 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.170 0.830 21 H 0.172 0.828 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 9.571 -1.098 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.269 5.269 3 C -0.184 4.184 4 C -0.109 4.109 5 N -0.227 5.227 6 C 0.139 3.861 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.732 3.268 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.342 3.658 16 O -0.460 6.460 17 H 0.097 0.903 18 H 0.083 0.917 19 H 0.082 0.918 20 H 0.187 0.813 21 H 0.189 0.811 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.329 8.536 -1.153 11.309 hybrid contribution 0.363 -0.081 0.984 1.052 sum -6.966 8.455 -0.169 10.956 Atomic orbital electron populations 1.21483 0.76769 1.02423 1.02530 1.45232 1.06553 1.06644 1.68488 1.21465 0.88993 0.92184 1.15744 1.21802 0.97616 0.84937 1.06586 1.46091 1.07608 1.06248 1.62718 1.19473 0.78911 0.89298 0.98428 1.21343 1.12638 1.31552 0.91795 0.92105 1.24934 0.95927 0.95138 0.97944 1.69919 1.18984 1.33281 1.30985 0.86443 0.77946 0.78354 0.84054 1.20047 1.21019 1.20066 1.16337 0.81565 0.84576 0.83297 1.90960 1.77603 1.16286 1.61177 0.90305 0.91728 0.91760 0.81322 0.81053 0.93362 0.93585 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.47 11.09 59.85 0.66 2.14 14 2 N -0.55 -10.01 3.18 -128.85 -0.41 -10.42 14 3 C -0.06 -0.93 11.45 -16.29 -0.19 -1.12 14 4 C 0.02 0.32 11.49 -16.30 -0.19 0.13 14 5 N -0.51 -12.03 2.76 -122.70 -0.34 -12.37 14 6 C 0.26 6.92 5.79 -5.20 -0.03 6.89 14 7 C -0.53 -15.47 9.39 -34.44 -0.32 -15.79 14 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 14 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 14 10 N -0.89 -26.35 13.29 55.43 0.74 -25.62 14 11 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 14 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 15 C 0.64 15.40 8.52 -86.95 -0.74 14.66 14 16 O -0.58 -16.28 17.70 5.10 0.09 -16.19 14 17 H 0.08 0.73 8.08 -51.93 -0.42 0.31 14 18 H 0.06 0.87 8.14 -51.93 -0.42 0.44 14 19 H 0.06 0.83 8.14 -51.93 -0.42 0.40 14 20 H 0.17 1.77 8.06 -52.49 -0.42 1.34 14 21 H 0.17 2.53 8.06 -52.48 -0.42 2.10 14 22 H 0.05 1.43 8.08 -51.93 -0.42 1.01 14 23 H 0.05 1.21 8.14 -51.93 -0.42 0.78 14 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 14 LS Contribution 223.79 15.07 3.37 3.37 Total: -1.00 -34.60 223.79 -4.97 -39.57 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -2.50 Total: -3.87 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.90 Total: 8.62 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.01 Total: -48.41 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -34.60 -4.97 -39.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666410.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.189 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds