Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38703 * 125.98278 * 2 1 4 4 C 1.32859 * 107.91431 * 180.02562 * 3 2 1 5 5 N 1.38697 * 107.91712 * 359.97438 * 4 3 2 6 6 C 1.46500 * 125.98339 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47180 * 89.97435 * 6 5 4 8 8 H 1.07997 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99963 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99839 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47383 * 60.00552 * 11 9 7 13 13 H 1.48499 * 109.47264 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47589 * 300.00318 * 11 9 7 15 15 C 1.34756 * 108.03012 * 359.74145 * 5 4 3 16 16 O 1.21796 * 125.94579 * 180.26562 * 15 5 4 17 17 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46813 * 240.02618 * 1 2 3 19 19 H 1.09004 * 109.47041 * 120.02745 * 1 2 3 20 20 H 1.07996 * 126.04030 * 359.97438 * 3 2 1 21 21 H 1.08004 * 126.04027 * 179.97438 * 4 3 2 22 22 H 1.09005 * 109.46782 * 209.97566 * 6 5 4 23 23 H 1.09001 * 109.47148 * 329.97017 * 6 5 4 24 24 H 0.96996 * 119.99639 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1224 0.0000 4 6 3.5430 0.7103 -0.0006 5 7 3.5393 -0.6767 -0.0003 6 6 4.7225 -1.5406 -0.0003 7 6 5.1287 -1.8360 1.4205 8 1 4.5619 -1.4221 2.2414 9 6 6.2233 -2.6357 1.6725 10 7 6.9132 -3.1402 0.6729 11 14 6.7262 -3.0025 3.4337 12 1 5.6114 -3.6894 4.1341 13 1 7.9256 -3.8781 3.4338 14 1 7.0419 -1.7314 4.1334 15 6 2.2569 -1.0904 0.0062 16 8 1.8792 -2.2483 0.0128 17 1 -0.3634 1.0277 -0.0005 18 1 -0.3633 -0.5134 0.8902 19 1 -0.3633 -0.5143 -0.8898 20 1 1.9466 2.1496 -0.0004 21 1 4.4180 1.3435 -0.0011 22 1 4.4909 -2.4739 -0.5136 23 1 5.5406 -1.0363 -0.5147 24 1 7.6834 -3.7024 0.8503 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666410.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -7.494916 kcal Electronic energy + Delta-G solvation = -10774.536020 eV Core-core repulsion = 8688.451712 eV Total energy + Delta-G solvation = -2086.084308 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.94970 -37.68769 -36.50267 -34.69557 -31.32493 -28.87890 -27.61336 -24.98606 -22.52220 -21.30070 -18.86890 -18.27240 -17.09554 -16.72341 -16.16193 -15.83938 -14.93656 -14.72707 -14.15324 -14.05932 -13.52247 -13.22154 -13.01703 -12.66700 -12.55865 -12.25891 -11.82203 -11.27024 -10.71458 -10.51824 -8.56541 -8.26995 -6.48035 1.35883 1.40655 1.47517 1.58874 1.60340 2.02083 2.35712 2.92179 2.99100 4.08056 4.50719 4.53098 4.61003 4.68425 4.78927 4.88039 4.97442 5.43747 5.54386 5.69312 5.87966 6.18489 6.58827 6.76948 7.20162 7.49588 8.76232 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.065282 B = 0.011249 C = 0.011067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.803716 B = 2488.526123 C = 2529.504834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.538 5.538 3 C -0.015 4.015 4 C -0.026 4.026 5 N -0.526 5.526 6 C 0.272 3.728 7 C -0.556 4.556 8 H 0.051 0.949 9 C 0.013 3.987 10 N -0.923 5.923 11 Si 0.975 3.025 12 H -0.279 1.279 13 H -0.272 1.272 14 H -0.258 1.258 15 C 0.608 3.392 16 O -0.642 6.642 17 H 0.135 0.865 18 H 0.060 0.940 19 H 0.065 0.935 20 H 0.236 0.764 21 H 0.200 0.800 22 H 0.003 0.997 23 H 0.047 0.953 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 12.031 -0.112 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.258 5.258 3 C -0.137 4.137 4 C -0.149 4.149 5 N -0.242 5.242 6 C 0.152 3.848 7 C -0.594 4.594 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.562 5.562 11 Si 0.799 3.201 12 H -0.205 1.205 13 H -0.197 1.197 14 H -0.182 1.182 15 C 0.310 3.690 16 O -0.526 6.526 17 H 0.153 0.847 18 H 0.078 0.922 19 H 0.083 0.917 20 H 0.252 0.748 21 H 0.217 0.783 22 H 0.021 0.979 23 H 0.065 0.935 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.991 11.089 -0.179 13.669 hybrid contribution 0.471 -0.766 0.616 1.089 sum -7.520 10.323 0.437 12.779 Atomic orbital electron populations 1.21927 0.73625 1.06033 1.02476 1.45479 1.08357 1.05759 1.66238 1.22494 0.87282 0.93600 1.10315 1.22478 1.00363 0.82482 1.09592 1.45915 1.06620 1.08410 1.63293 1.18962 0.80287 0.88371 0.97228 1.21546 1.13163 1.32458 0.92273 0.93026 1.25875 0.95656 0.94497 1.02648 1.70024 1.19349 1.33513 1.33271 0.85354 0.77577 0.78871 0.78337 1.20471 1.19713 1.18239 1.16761 0.82394 0.85233 0.84586 1.90878 1.78683 1.18991 1.64077 0.84724 0.92166 0.91669 0.74779 0.78333 0.97862 0.93530 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.34 11.09 127.77 1.42 3.75 14 2 N -0.54 -18.47 3.18 -679.75 -2.16 -20.63 14 3 C -0.01 -0.39 11.45 82.43 0.94 0.55 14 4 C -0.03 -0.87 11.49 82.43 0.95 0.07 14 5 N -0.53 -25.25 2.76 -660.30 -1.82 -27.08 14 6 C 0.27 15.31 5.79 85.63 0.50 15.81 14 7 C -0.56 -33.06 9.39 25.60 0.24 -32.82 14 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 14 9 C 0.01 0.78 5.46 84.66 0.46 1.24 14 10 N -0.92 -55.47 13.29 21.45 0.28 -55.19 14 11 Si 0.98 45.01 29.54 68.60 2.03 47.04 14 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 14 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 14 14 H -0.26 -11.14 7.11 99.48 0.71 -10.44 14 15 C 0.61 29.82 8.52 179.07 1.53 31.35 14 16 O -0.64 -37.76 17.70 -4.65 -0.08 -37.84 14 17 H 0.13 1.67 8.08 -2.39 -0.02 1.65 14 18 H 0.06 1.49 8.14 -2.39 -0.02 1.47 14 19 H 0.06 1.54 8.14 -2.38 -0.02 1.52 14 20 H 0.24 3.05 8.06 -2.91 -0.02 3.03 14 21 H 0.20 5.38 8.06 -2.91 -0.02 5.36 14 22 H 0.00 0.21 8.08 -2.38 -0.02 0.19 14 23 H 0.05 2.55 8.14 -2.39 -0.02 2.54 14 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 14 Total: -1.00 -79.89 223.79 5.46 -74.43 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 1.18 Total: -0.69 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 6.03 Total: 19.96 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.70 Total: -102.89 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.08 Total: -37.84 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.89 5.46 -74.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666410.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.934 kcal (2) G-P(sol) polarization free energy of solvation -79.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds