Wall clock time and date at job start Mon Mar 30 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.28573 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47282 * 89.99642 * 5 4 3 7 7 C 1.50706 * 109.47287 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99705 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00047 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00371 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99951 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47088 * 60.00241 * 11 9 7 13 13 H 1.48497 * 109.47183 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46908 * 299.99929 * 11 9 7 15 15 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 16 16 O 1.21304 * 110.24811 * 359.71096 * 15 4 3 17 17 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 18 18 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 19 19 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 20 20 H 1.09002 * 109.46933 * 209.99854 * 5 4 3 21 21 H 1.08999 * 109.47263 * 329.99505 * 5 4 3 22 22 H 1.09002 * 109.47309 * 299.99981 * 6 5 4 23 23 H 1.09001 * 109.47217 * 60.00285 * 6 5 4 24 24 H 0.97004 * 120.00592 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0014 6 6 5.2392 1.6647 1.4441 7 6 6.5066 2.4800 1.4449 8 1 6.9611 2.7724 0.5098 9 6 7.0853 2.8534 2.6392 10 7 6.5317 2.4977 3.7778 11 14 8.6560 3.8647 2.6402 12 1 8.4163 5.1519 1.9397 13 1 9.0715 4.1324 4.0404 14 1 9.7291 3.1129 1.9411 15 7 3.4646 -0.7242 0.0015 16 8 2.3029 -1.0735 0.0072 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3634 -0.8900 0.5138 19 1 -0.3633 0.8900 0.5138 20 1 5.5987 0.8371 -0.5121 21 1 4.6351 2.3337 -0.5125 22 1 4.4516 2.2162 1.9576 23 1 5.4153 0.7196 1.9580 24 1 6.9390 2.7602 4.6182 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107325106.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:31 Heat of formation + Delta-G solvation = 48.829918 kcal Electronic energy + Delta-G solvation = -10407.485540 eV Core-core repulsion = 8323.843661 eV Total energy + Delta-G solvation = -2083.641880 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -45.11833 -35.85503 -34.05314 -32.88168 -30.68655 -28.58799 -25.87344 -23.26017 -21.94717 -20.24653 -17.73854 -16.98924 -16.28371 -14.74215 -14.49434 -13.61369 -13.41434 -13.02523 -12.80996 -12.35175 -11.77291 -11.61039 -10.95417 -10.94420 -10.62743 -10.60122 -9.97078 -9.86350 -9.24150 -9.09581 -8.37938 -6.02463 -4.06481 1.56646 2.76315 3.18961 3.33773 3.37649 3.40296 4.11042 4.43714 4.67235 5.23445 5.23865 5.33417 5.35651 5.75368 6.12517 6.31474 6.42918 6.53016 6.84986 7.60125 7.70066 7.94537 8.32485 8.68026 8.98928 9.57567 11.08994 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.098450 B = 0.008157 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.338897 B = 3431.823867 C = 3485.352573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.156 3.844 3 N -0.480 5.480 4 C 0.195 3.805 5 C -0.029 4.029 6 C 0.031 3.969 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 N -0.394 5.394 16 O 0.065 5.935 17 H 0.096 0.904 18 H 0.093 0.907 19 H 0.101 0.899 20 H 0.078 0.922 21 H 0.083 0.917 22 H 0.022 0.978 23 H 0.019 0.981 24 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 -4.185 -6.752 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.066 4.066 3 N -0.215 5.215 4 C -0.077 4.077 5 C -0.068 4.068 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 N -0.103 5.103 16 O 0.008 5.992 17 H 0.114 0.886 18 H 0.111 0.889 19 H 0.120 0.880 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.699 -4.275 -6.562 12.466 hybrid contribution 0.689 0.486 0.184 0.863 sum -9.010 -3.789 -6.378 11.671 Atomic orbital electron populations 1.20274 0.80822 1.05488 1.04811 1.28792 0.98810 0.81462 0.97487 1.71910 1.00817 1.28826 1.19917 1.26496 0.95796 0.88036 0.97401 1.20376 0.86523 0.96486 1.03460 1.19072 0.96607 0.97306 0.87722 1.21102 1.08704 1.33779 0.92617 0.92287 1.25025 0.97674 0.96148 0.95526 1.69965 1.39952 1.45981 0.97349 0.86571 0.83321 0.80616 0.76996 1.20102 1.21237 1.20140 1.74631 0.96625 1.16318 1.22745 1.85242 1.11784 1.35799 1.66328 0.88593 0.88870 0.88043 0.90305 0.89854 0.95971 0.96291 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.01 0.38 -0.09 14 2 C 0.16 2.36 8.51 -13.05 -0.11 2.25 14 3 N -0.48 -9.28 11.55 -9.87 -0.11 -9.39 14 4 C 0.19 4.16 7.47 -156.38 -1.17 2.99 14 5 C -0.03 -0.66 5.78 -27.88 -0.16 -0.82 14 6 C 0.03 0.85 4.96 -27.88 -0.14 0.71 14 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 14 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 10 N -0.89 -27.43 13.29 55.43 0.74 -26.69 14 11 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 14 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 13 H -0.29 -6.90 7.11 56.52 0.40 -6.49 14 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 15 N -0.39 -8.10 12.16 30.90 0.38 -7.73 14 16 O 0.06 1.11 11.31 18.11 0.20 1.32 14 17 H 0.10 0.59 8.14 -51.93 -0.42 0.16 14 18 H 0.09 0.56 8.14 -51.93 -0.42 0.13 14 19 H 0.10 0.79 8.14 -51.93 -0.42 0.36 14 20 H 0.08 1.69 8.14 -51.93 -0.42 1.27 14 21 H 0.08 1.77 8.14 -51.93 -0.42 1.35 14 22 H 0.02 0.64 8.14 -51.93 -0.42 0.22 14 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 14 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 14 LS Contribution 224.00 15.07 3.38 3.38 Total: -1.00 -33.26 224.00 -4.55 -37.81 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: -2.50 Total: -6.75 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.61 Total: -8.76 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 1.00 Total: -43.81 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -33.26 -4.55 -37.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107325106.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.644 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds