Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40092 * 126.03477 * 2 1 4 4 C 1.30833 * 108.20131 * 179.84763 * 3 2 1 5 5 C 1.39866 * 108.20640 * 0.40744 * 4 3 2 6 6 C 1.34944 * 126.04107 * 180.30476 * 2 1 3 7 7 C 1.50704 * 126.12371 * 0.02562 * 6 2 1 8 8 H 1.09002 * 109.46920 * 335.22274 * 7 6 2 9 9 O 1.42899 * 109.46949 * 215.22755 * 7 6 2 10 10 C 1.50696 * 109.47411 * 95.22481 * 7 6 2 11 11 H 1.08005 * 119.99969 * 359.97438 * 10 7 6 12 12 C 1.37868 * 120.00577 * 180.02562 * 10 7 6 13 13 N 1.31522 * 119.99926 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00472 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47455 * 59.99736 * 14 12 10 16 16 H 1.48506 * 109.47235 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47024 * 299.99647 * 14 12 10 18 18 H 1.08992 * 109.47913 * 264.20190 * 1 2 3 19 19 H 1.09001 * 109.47290 * 24.20152 * 1 2 3 20 20 H 1.09004 * 109.47086 * 144.19852 * 1 2 3 21 21 H 1.08000 * 125.89886 * 180.14445 * 4 3 2 22 22 H 1.08001 * 126.04378 * 179.74324 * 5 4 3 23 23 H 0.96704 * 113.99719 * 303.97423 * 9 7 6 24 24 H 0.96996 * 120.00264 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 0.0033 5 6 3.5437 -0.6664 -0.0039 6 6 2.2589 -1.0911 -0.0058 7 6 1.7974 -2.5257 -0.0140 8 1 0.7977 -2.5882 0.4160 9 8 2.6989 -3.3205 0.7591 10 6 1.7672 -3.0357 -1.4317 11 1 2.0532 -2.3858 -2.2456 12 6 1.3734 -4.3314 -1.6901 13 7 1.0246 -5.1227 -0.6991 14 14 1.3367 -4.9638 -3.4474 15 1 2.6989 -4.8794 -4.0324 16 1 0.8817 -6.3774 -3.4554 17 1 0.4007 -4.1375 -4.2513 18 1 -0.3634 -0.1038 1.0223 19 1 -0.3634 0.9373 -0.4213 20 1 -0.3633 -0.8335 -0.6012 21 1 4.4053 1.3711 0.0064 22 1 4.4211 -1.2962 -0.0073 23 1 3.6200 -3.2640 0.4700 24 1 0.7473 -6.0342 -0.8809 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160235827.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = 0.192067 kcal Electronic energy + Delta-G solvation = -10893.753845 eV Core-core repulsion = 8808.002870 eV Total energy + Delta-G solvation = -2085.750975 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.00899 -37.61074 -34.40348 -34.02257 -31.45855 -28.58712 -27.50456 -24.94338 -21.86580 -20.68349 -19.19081 -18.01585 -16.72198 -16.18990 -16.00963 -15.44623 -15.00034 -14.31107 -14.10789 -13.57666 -13.27529 -13.09305 -13.00040 -12.80528 -12.15170 -11.79963 -11.36097 -10.80693 -10.53721 -10.02768 -9.33183 -8.19358 -6.47407 1.05372 1.41996 1.43222 1.51763 1.76922 2.03119 2.39059 3.06427 3.81728 4.01661 4.21677 4.39891 4.40509 4.64244 4.70024 4.95320 5.06300 5.56006 5.64844 5.88427 5.91116 6.20395 6.59931 6.87451 7.23652 7.39802 8.84089 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052151 B = 0.013298 C = 0.012889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.777165 B = 2105.007127 C = 2171.883840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.383 5.383 3 N -0.339 5.339 4 C 0.047 3.953 5 C -0.298 4.298 6 C 0.077 3.923 7 C 0.291 3.709 8 H 0.043 0.957 9 O -0.567 6.567 10 C -0.576 4.576 11 H 0.052 0.948 12 C 0.036 3.964 13 N -0.892 5.892 14 Si 0.962 3.038 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.270 1.270 18 H 0.082 0.918 19 H 0.105 0.895 20 H 0.082 0.918 21 H 0.217 0.783 22 H 0.154 0.846 23 H 0.363 0.637 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 6.529 -0.669 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.166 5.166 3 N -0.161 5.161 4 C -0.138 4.138 5 C -0.327 4.327 6 C -0.052 4.052 7 C 0.231 3.769 8 H 0.061 0.939 9 O -0.371 6.371 10 C -0.614 4.614 11 H 0.070 0.930 12 C -0.167 4.167 13 N -0.528 5.528 14 Si 0.787 3.213 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.195 1.195 18 H 0.100 0.900 19 H 0.123 0.877 20 H 0.101 0.899 21 H 0.234 0.766 22 H 0.171 0.829 23 H 0.210 0.790 24 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.084 7.207 -0.270 7.212 hybrid contribution 0.850 -1.058 -1.038 1.708 sum 0.766 6.149 -1.309 6.333 Atomic orbital electron populations 1.21989 0.73506 1.05077 1.03859 1.48632 1.07401 1.03069 1.57545 1.77109 1.02616 1.08943 1.27443 1.24293 0.95688 0.94911 0.98899 1.21360 0.96412 0.95641 1.19331 1.22720 0.92610 0.92376 0.97465 1.17761 0.89057 0.78967 0.91097 0.93924 1.86564 1.20611 1.70372 1.59512 1.21592 1.49087 0.98278 0.92431 0.93023 1.25805 0.93047 0.96685 1.01212 1.70167 1.42254 1.07340 1.33081 0.85569 0.78944 0.77327 0.79510 1.19384 1.20511 1.19460 0.89979 0.87654 0.89910 0.76624 0.82877 0.79040 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.16 10.95 127.77 1.40 4.56 14 2 N -0.38 -15.64 4.01 -356.04 -1.43 -17.07 14 3 N -0.34 -13.17 12.58 -57.03 -0.72 -13.89 14 4 C 0.05 1.63 12.02 85.24 1.02 2.66 14 5 C -0.30 -11.71 10.13 21.99 0.22 -11.49 14 6 C 0.08 3.43 5.93 41.41 0.25 3.68 14 7 C 0.29 14.76 2.97 29.10 0.09 14.85 14 8 H 0.04 2.34 7.61 -2.39 -0.02 2.32 14 9 O -0.57 -29.07 12.65 -148.98 -1.88 -30.96 14 10 C -0.58 -30.97 8.77 25.60 0.22 -30.74 14 11 H 0.05 2.80 7.74 -2.91 -0.02 2.77 14 12 C 0.04 1.96 5.40 84.65 0.46 2.42 14 13 N -0.89 -50.96 12.84 21.45 0.28 -50.69 14 14 Si 0.96 42.01 29.54 68.60 2.03 44.04 14 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 14 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 14 18 H 0.08 2.39 8.14 -2.39 -0.02 2.37 14 19 H 0.10 2.86 8.14 -2.39 -0.02 2.84 14 20 H 0.08 2.85 7.82 -2.38 -0.02 2.83 14 21 H 0.22 5.26 8.06 -2.91 -0.02 5.24 14 22 H 0.15 5.38 7.50 -2.91 -0.02 5.36 14 23 H 0.36 16.16 8.05 -74.05 -0.60 15.57 14 24 H 0.27 14.36 8.31 -92.71 -0.77 13.59 14 Total: -1.00 -64.97 220.48 2.54 -62.42 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.61 Total: 20.22 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.66 Total: -14.07 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.87 Total: -81.65 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.88 Total: -30.96 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.97 2.54 -62.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160235827.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.616 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds