Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40087 * 126.03857 * 2 1 4 4 C 1.30838 * 108.20221 * 180.22747 * 3 2 1 5 5 C 1.39868 * 108.20630 * 359.77610 * 4 3 2 6 6 C 1.34949 * 126.03896 * 179.83746 * 2 1 3 7 7 C 1.50707 * 126.12141 * 0.04114 * 6 2 1 8 8 H 1.08999 * 109.47345 * 24.71411 * 7 6 2 9 9 O 1.42903 * 109.46442 * 144.71341 * 7 6 2 10 10 C 1.50696 * 109.47163 * 264.70960 * 7 6 2 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 H 1.08995 * 109.47572 * 270.15610 * 1 2 3 19 19 H 1.09006 * 109.46621 * 30.15985 * 1 2 3 20 20 H 1.09001 * 109.47155 * 150.15108 * 1 2 3 21 21 H 1.08002 * 125.89530 * 179.81483 * 4 3 2 22 22 H 1.07999 * 126.04078 * 180.02562 * 5 4 3 23 23 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 24 24 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7320 -0.0049 5 6 3.5437 -0.6666 -0.0030 6 6 2.2589 -1.0912 0.0031 7 6 1.7972 -2.5258 0.0063 8 1 0.7975 -2.5868 -0.4238 9 8 2.6987 -3.3179 -0.7696 10 6 1.7672 -3.0407 1.4222 11 1 2.0534 -2.3938 2.2383 12 6 1.3744 -4.3378 1.6759 13 7 1.0264 -5.1257 0.6821 14 14 1.3365 -4.9759 3.4311 15 1 -0.0010 -4.7182 4.0227 16 1 1.6056 -6.4363 3.4329 17 1 2.3749 -4.2803 4.2332 18 1 -0.3634 0.0028 1.0276 19 1 -0.3633 0.8886 -0.5164 20 1 -0.3633 -0.8913 -0.5115 21 1 4.4054 1.3709 -0.0091 22 1 4.4210 -1.2964 -0.0056 23 1 3.6092 -3.3104 -0.4439 24 1 0.7497 -6.0381 0.8606 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160235931.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = 23.475092 kcal Electronic energy + Delta-G solvation = -10892.060782 eV Core-core repulsion = 8807.319435 eV Total energy + Delta-G solvation = -2084.741347 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.42168 -35.66072 -32.62560 -32.24664 -29.73191 -26.65264 -26.05872 -23.01319 -20.34873 -18.99815 -17.19589 -16.29765 -14.72386 -14.65915 -14.23698 -13.84871 -13.23540 -12.70283 -12.35727 -12.09541 -11.74176 -11.29073 -11.07636 -10.98909 -10.29698 -10.13843 -9.42928 -8.83403 -8.60707 -8.36665 -7.69220 -6.15506 -4.35492 2.68049 3.20527 3.25011 3.28899 3.33078 3.60013 4.30670 5.11350 5.19261 5.65154 5.69551 5.79244 5.91841 6.17753 6.24774 6.56520 6.71001 7.36825 7.45217 7.69508 7.75710 7.96217 8.44223 8.67480 9.17758 9.40785 10.88062 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052192 B = 0.013295 C = 0.012882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.348333 B = 2105.603955 C = 2172.973237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.374 5.374 3 N -0.329 5.329 4 C 0.040 3.960 5 C -0.295 4.295 6 C 0.106 3.894 7 C 0.284 3.716 8 H 0.068 0.932 9 O -0.553 6.553 10 C -0.565 4.565 11 H 0.059 0.941 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.272 1.272 18 H 0.071 0.929 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.173 0.827 22 H 0.139 0.861 23 H 0.353 0.647 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 5.631 -0.177 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.157 5.157 3 N -0.151 5.151 4 C -0.145 4.145 5 C -0.324 4.324 6 C -0.022 4.022 7 C 0.224 3.776 8 H 0.085 0.915 9 O -0.354 6.354 10 C -0.603 4.603 11 H 0.078 0.922 12 C -0.125 4.125 13 N -0.493 5.493 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.196 1.196 18 H 0.089 0.911 19 H 0.096 0.904 20 H 0.106 0.894 21 H 0.190 0.810 22 H 0.156 0.844 23 H 0.198 0.802 24 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.700 6.335 -0.602 6.402 hybrid contribution 0.992 -0.908 1.375 1.924 sum 0.292 5.427 0.773 5.489 Atomic orbital electron populations 1.21723 0.75112 1.03532 1.03126 1.48321 1.06203 1.03519 1.57687 1.77128 1.01776 1.08931 1.27259 1.23625 0.94963 0.95228 1.00724 1.21021 0.96705 0.94309 1.20370 1.23039 0.91246 0.93091 0.94841 1.18096 0.89917 0.77329 0.92209 0.91471 1.86597 1.21175 1.71345 1.56322 1.21430 1.49114 0.97977 0.91801 0.92229 1.25030 0.93639 0.96581 0.97296 1.70063 1.41363 1.07043 1.30781 0.86543 0.78620 0.78136 0.84394 1.20429 1.20897 1.19627 0.91071 0.90403 0.89378 0.81013 0.84361 0.80221 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.79 11.27 59.85 0.67 2.46 14 2 N -0.37 -7.84 4.01 -63.88 -0.26 -8.10 14 3 N -0.33 -6.77 12.58 30.62 0.39 -6.38 14 4 C 0.04 0.75 12.02 -17.36 -0.21 0.54 14 5 C -0.29 -6.07 10.17 -40.02 -0.41 -6.48 14 6 C 0.11 2.40 5.93 -82.26 -0.49 1.91 14 7 C 0.28 7.13 3.10 -29.03 -0.09 7.04 14 8 H 0.07 1.77 6.94 -51.93 -0.36 1.41 14 9 O -0.55 -14.01 12.61 -35.23 -0.44 -14.46 14 10 C -0.56 -15.15 8.75 -34.44 -0.30 -15.45 14 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 14 12 C 0.08 2.20 5.40 -17.82 -0.10 2.10 14 13 N -0.86 -24.25 12.84 55.43 0.71 -23.54 14 14 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 14 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 14 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 14 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 14 18 H 0.07 1.13 8.14 -51.93 -0.42 0.70 14 19 H 0.08 1.09 8.14 -51.93 -0.42 0.67 14 20 H 0.09 1.43 6.97 -51.93 -0.36 1.07 14 21 H 0.17 2.48 8.06 -52.49 -0.42 2.06 14 22 H 0.14 2.58 7.58 -52.49 -0.40 2.18 14 23 H 0.35 7.89 8.19 45.56 0.37 8.26 14 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 14 LS Contribution 219.60 15.07 3.31 3.31 Total: -1.00 -31.15 219.60 -3.79 -34.94 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -1.56 Total: 6.50 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.92 Total: -7.87 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.84 Total: -38.02 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.44 Total: -14.46 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -31.15 -3.79 -34.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160235931.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.417 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds