Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46877 * 2 1 4 4 C 1.35207 * 125.99624 * 125.25712 * 3 2 1 5 5 C 1.35835 * 107.64370 * 180.14647 * 4 3 2 6 6 O 1.36004 * 126.11243 * 179.87592 * 5 4 3 7 7 C 1.34791 * 117.00250 * 179.70961 * 6 5 4 8 8 H 1.08000 * 120.00424 * 0.02562 * 7 6 5 9 9 C 1.38635 * 120.00033 * 180.02562 * 7 6 5 10 10 N 1.31588 * 120.00086 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99846 * 179.72826 * 9 7 6 12 12 H 1.48498 * 109.46909 * 89.99889 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99798 * 11 9 7 14 14 H 1.48494 * 109.47142 * 329.99723 * 11 9 7 15 15 C 1.40297 * 107.77827 * 359.61016 * 5 4 3 16 16 N 1.30821 * 108.20987 * 0.24089 * 15 5 4 17 17 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.47875 * 300.00018 * 1 2 3 19 19 H 1.09003 * 109.46887 * 60.00801 * 1 2 3 20 20 H 1.08996 * 109.47875 * 239.99982 * 2 1 3 21 21 H 1.09003 * 109.46887 * 119.99199 * 2 1 3 22 22 H 1.07991 * 126.17461 * 359.97438 * 4 3 2 23 23 H 0.96990 * 119.99807 * 179.97438 * 10 9 7 24 24 H 1.08000 * 125.89309 * 180.24049 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8785 1.9200 0.8932 5 6 3.0729 3.2187 0.5459 6 8 3.8692 4.1111 1.1934 7 6 3.9320 5.3574 0.6840 8 1 3.3643 5.6089 -0.1997 9 6 4.7252 6.3166 1.2944 10 7 5.4165 6.0105 2.3714 11 14 4.8181 8.0418 0.5841 12 1 3.7599 8.8861 1.1945 13 1 6.1504 8.6275 0.8792 14 1 4.6179 7.9832 -0.8862 15 6 2.3101 3.4735 -0.6037 16 7 1.6804 2.3738 -0.9285 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3635 0.5138 0.8899 19 1 -0.3633 0.5137 -0.8901 20 1 1.8935 -0.5138 -0.8899 21 1 1.8933 -0.5137 0.8901 22 1 3.3275 1.4106 1.7329 23 1 5.9718 6.6815 2.7983 24 1 2.2527 4.4150 -1.1297 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162090549.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = 50.510426 kcal Electronic energy + Delta-G solvation = -10517.656219 eV Core-core repulsion = 8434.087212 eV Total energy + Delta-G solvation = -2083.569007 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.28462 -36.74973 -33.69955 -31.92324 -29.59115 -27.72833 -24.82598 -23.37022 -20.19368 -20.08891 -17.61492 -16.46675 -15.20187 -14.99056 -14.13803 -13.80360 -13.49579 -13.11818 -12.68339 -12.01175 -11.86018 -11.67091 -11.28951 -11.16678 -10.84096 -10.37100 -10.21647 -9.26027 -8.65451 -8.59653 -6.88150 -6.18275 -3.76957 2.63449 3.15372 3.23023 3.27351 3.31218 3.86731 4.16633 4.84820 5.16609 5.27385 5.32855 5.50612 5.60535 5.78886 5.90867 6.18521 6.23356 6.47344 6.77261 7.37583 7.40658 7.86888 8.21851 8.48798 9.27299 10.02312 11.02000 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.102151 B = 0.009338 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.036944 B = 2997.785817 C = 3201.100682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 N -0.378 5.378 4 C -0.056 4.056 5 C 0.021 3.979 6 O -0.187 6.187 7 C -0.376 4.376 8 H 0.078 0.922 9 C 0.031 3.969 10 N -0.879 5.879 11 Si 0.937 3.063 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.271 1.271 15 C -0.015 4.015 16 N -0.292 5.292 17 H 0.067 0.933 18 H 0.059 0.941 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.166 0.834 23 H 0.264 0.736 24 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 -7.798 -3.568 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 N -0.171 5.171 4 C -0.197 4.197 5 C -0.036 4.036 6 O -0.093 6.093 7 C -0.454 4.454 8 H 0.096 0.904 9 C -0.170 4.170 10 N -0.518 5.518 11 Si 0.762 3.238 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.195 1.195 15 C -0.201 4.201 16 N -0.117 5.117 17 H 0.086 0.914 18 H 0.078 0.922 19 H 0.086 0.914 20 H 0.091 0.909 21 H 0.107 0.893 22 H 0.183 0.817 23 H 0.074 0.926 24 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.642 -8.360 -4.006 11.404 hybrid contribution 0.619 1.311 0.211 1.465 sum -6.024 -7.049 -3.795 10.019 Atomic orbital electron populations 1.22064 0.94713 1.01966 1.03454 1.21369 0.95190 0.78359 1.02768 1.47801 1.37623 1.09294 1.22341 1.20966 1.04000 0.94021 1.00741 1.19255 0.98198 0.91281 0.94896 1.83958 1.57660 1.19438 1.48197 1.21024 1.28535 0.84333 1.11478 0.90412 1.25109 0.96378 0.99180 0.96341 1.70042 1.28312 1.34277 1.19119 0.85783 0.77782 0.81312 0.78887 1.20280 1.20591 1.19533 1.23955 0.99653 0.97678 0.98829 1.76914 1.23751 0.96965 1.14027 0.91435 0.92194 0.91378 0.90883 0.89324 0.81718 0.92606 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.10 37.16 0.38 -1.52 14 2 C 0.14 1.89 7.23 -4.04 -0.03 1.87 14 3 N -0.38 -7.14 3.68 -61.16 -0.23 -7.36 14 4 C -0.06 -1.19 11.49 -16.93 -0.19 -1.38 14 5 C 0.02 0.53 6.93 -39.67 -0.27 0.25 14 6 O -0.19 -5.55 9.84 -0.63 -0.01 -5.56 14 7 C -0.38 -10.92 9.63 30.88 0.30 -10.63 14 8 H 0.08 2.08 5.95 -52.49 -0.31 1.77 14 9 C 0.03 0.89 5.49 -17.51 -0.10 0.79 14 10 N -0.88 -26.88 13.68 55.48 0.76 -26.12 14 11 Si 0.94 21.45 29.55 -169.99 -5.02 16.42 14 12 H -0.28 -6.19 7.11 56.52 0.40 -5.78 14 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 14 15 C -0.01 -0.34 11.06 -17.21 -0.19 -0.53 14 16 N -0.29 -6.15 12.40 30.71 0.38 -5.77 14 17 H 0.07 0.57 8.14 -51.93 -0.42 0.15 14 18 H 0.06 0.75 8.14 -51.93 -0.42 0.32 14 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 14 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 14 21 H 0.09 0.94 8.07 -51.93 -0.42 0.52 14 22 H 0.17 3.06 8.06 -52.49 -0.42 2.63 14 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 14 24 H 0.18 3.77 6.78 -52.49 -0.36 3.41 14 LS Contribution 222.13 15.07 3.35 3.35 Total: -1.00 -33.39 222.13 -3.22 -36.61 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.34 Total: -0.42 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.11 Total: -11.15 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.91 Total: -39.25 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.01 Total: -5.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -33.39 -3.22 -36.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162090549.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.116 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds