Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35289 * 116.99680 * 2 1 4 4 C 1.40249 * 126.51619 * 267.46522 * 3 2 1 5 5 C 1.41287 * 126.62196 * 0.03561 * 4 3 2 6 6 H 1.07998 * 120.00374 * 359.70862 * 5 4 3 7 7 C 1.39599 * 120.00193 * 179.71416 * 5 4 3 8 8 N 1.31157 * 119.99639 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00454 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47285 * 89.99709 * 9 7 5 11 11 H 1.48497 * 109.47189 * 210.00046 * 9 7 5 12 12 H 1.48504 * 109.46853 * 329.99803 * 9 7 5 13 13 C 1.41847 * 106.75952 * 179.77186 * 4 3 2 14 14 N 1.30272 * 108.18558 * 0.22204 * 13 4 3 15 15 N 1.34919 * 126.52197 * 87.62609 * 3 2 1 16 16 C 1.46501 * 125.68758 * 359.97438 * 15 3 2 17 17 H 1.09002 * 109.46484 * 61.39219 * 1 2 3 18 18 H 1.09002 * 109.46371 * 181.38615 * 1 2 3 19 19 H 1.08997 * 109.47002 * 301.38878 * 1 2 3 20 20 H 0.97000 * 120.00082 * 180.02562 * 8 7 5 21 21 H 1.07998 * 125.91003 * 180.19354 * 13 4 3 22 22 H 1.09004 * 109.46769 * 275.43909 * 16 15 3 23 23 H 1.09001 * 109.47173 * 35.43425 * 16 15 3 24 24 H 1.08996 * 109.47239 * 155.44151 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 6 2.4665 1.9265 -1.1261 5 6 2.3331 1.5345 -2.4769 6 1 1.8691 0.5906 -2.7220 7 6 2.8012 2.3672 -3.4948 8 7 3.3644 3.5137 -3.1972 9 14 2.6256 1.8487 -5.2808 10 1 1.3297 2.3404 -5.8139 11 1 3.7390 2.4262 -6.0757 12 1 2.6683 0.3671 -5.3725 13 6 3.0488 3.1280 -0.6473 14 7 2.9829 3.1215 0.6537 15 7 2.3677 1.9413 1.0833 16 6 2.1125 1.5689 2.4771 17 1 -0.3632 0.4921 -0.9023 18 1 -0.3632 -1.0274 0.0249 19 1 -0.3633 0.5352 0.8772 20 1 3.6894 4.0925 -3.9045 21 1 3.4737 3.9124 -1.2560 22 1 1.0976 1.8578 2.7503 23 1 2.2269 0.4911 2.5919 24 1 2.8231 2.0810 3.1259 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213672469.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = 15.175835 kcal Electronic energy + Delta-G solvation = -10927.395248 eV Core-core repulsion = 8842.294017 eV Total energy + Delta-G solvation = -2085.101230 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.36366 -38.40376 -35.64315 -33.28701 -30.69379 -28.53043 -27.16258 -25.90912 -21.77207 -21.26672 -19.27977 -17.89949 -16.74950 -16.67217 -15.92602 -15.39740 -15.16629 -14.53750 -14.03298 -13.35844 -13.22043 -12.94721 -12.85316 -12.79619 -12.34255 -11.98757 -11.34321 -11.18059 -10.54273 -9.64446 -9.20800 -8.43368 -6.05775 1.00640 1.44999 1.50081 1.58807 2.00797 2.29278 2.32212 3.17484 3.52703 4.09874 4.39276 4.48048 4.59319 4.65189 4.72617 4.83179 5.13077 5.42342 5.54943 5.88552 6.04940 6.53575 6.78849 7.07835 7.25172 7.41033 8.56881 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.053105 B = 0.014892 C = 0.011968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.133158 B = 1879.753759 C = 2339.039262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.059 3.941 4 C -0.053 4.053 5 C -0.459 4.459 6 H 0.065 0.935 7 C 0.024 3.976 8 N -0.859 5.859 9 Si 0.992 3.008 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.265 1.265 13 C 0.009 3.991 14 N -0.325 5.325 15 N -0.399 5.399 16 C 0.108 3.892 17 H 0.031 0.969 18 H 0.119 0.881 19 H 0.043 0.957 20 H 0.284 0.716 21 H 0.199 0.801 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 -3.599 3.086 6.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C -0.105 4.105 4 C -0.064 4.064 5 C -0.493 4.493 6 H 0.083 0.917 7 C -0.185 4.185 8 N -0.490 5.490 9 Si 0.814 3.186 10 H -0.190 1.190 11 H -0.192 1.192 12 H -0.189 1.189 13 C -0.176 4.176 14 N -0.152 5.152 15 N -0.198 5.198 16 C -0.033 4.033 17 H 0.049 0.951 18 H 0.137 0.863 19 H 0.061 0.939 20 H 0.095 0.905 21 H 0.215 0.785 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.714 -3.105 4.110 6.351 hybrid contribution -0.463 -0.356 -1.290 1.416 sum -4.178 -3.461 2.821 6.115 Atomic orbital electron populations 1.23229 0.80150 1.03854 0.99938 1.85972 1.20432 1.22211 1.93283 1.19177 1.12739 0.91302 0.87246 1.18431 1.01378 0.93409 0.93163 1.18878 1.35922 1.04589 0.89869 0.91680 1.26581 0.92529 0.93921 1.05437 1.69556 1.33170 1.10336 1.35979 0.85040 0.78752 0.79080 0.75739 1.18971 1.19245 1.18936 1.24785 1.02284 1.00538 0.90034 1.76505 1.21153 1.02491 1.15097 1.48239 1.50538 1.14893 1.06136 1.21752 1.02245 1.01604 0.77707 0.95059 0.86270 0.93861 0.90501 0.78498 0.91098 0.89637 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 11.13 113.37 1.26 2.09 14 2 O -0.31 -14.28 10.46 -85.75 -0.90 -15.17 14 3 C 0.06 3.06 7.08 84.71 0.60 3.66 14 4 C -0.05 -3.07 5.95 -21.15 -0.13 -3.20 14 5 C -0.46 -26.23 9.38 23.35 0.22 -26.01 14 6 H 0.06 3.66 7.84 -2.91 -0.02 3.63 14 7 C 0.02 1.27 5.49 85.12 0.47 1.74 14 8 N -0.86 -45.89 10.32 21.78 0.22 -45.66 14 9 Si 0.99 40.24 29.56 68.60 2.03 42.27 14 10 H -0.26 -10.30 7.11 99.48 0.71 -9.59 14 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 14 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 14 13 C 0.01 0.48 10.90 85.82 0.94 1.42 14 14 N -0.33 -17.09 12.45 -55.99 -0.70 -17.79 14 15 N -0.40 -19.06 3.99 -478.39 -1.91 -20.97 14 16 C 0.11 3.61 11.38 127.77 1.45 5.07 14 17 H 0.03 1.18 8.14 -2.39 -0.02 1.16 14 18 H 0.12 3.19 8.14 -2.39 -0.02 3.17 14 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 14 20 H 0.28 13.73 8.30 -92.71 -0.77 12.96 14 21 H 0.20 11.26 5.76 -2.91 -0.02 11.24 14 22 H 0.07 2.06 8.14 -2.39 -0.02 2.04 14 23 H 0.09 2.57 8.14 -2.39 -0.02 2.55 14 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 14 Total: -1.00 -65.55 220.17 4.75 -60.80 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.19 Total: 11.76 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.81 Total: -15.23 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.38 Total: -84.42 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.90 Total: -15.17 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -65.55 4.75 -60.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213672469.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.971 kcal (2) G-P(sol) polarization free energy of solvation -65.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds