Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99830 * 2 1 4 4 N 1.46499 * 109.46825 * 179.97438 * 3 2 1 5 5 C 1.36418 * 126.55823 * 0.02562 * 4 3 2 6 6 C 1.36219 * 107.19767 * 179.97438 * 5 4 3 7 7 N 1.32756 * 108.61652 * 0.26917 * 6 5 4 8 8 C 1.32987 * 109.22682 * 359.56246 * 7 6 5 9 9 C 1.39994 * 125.96158 * 180.17102 * 8 7 6 10 10 H 1.08001 * 119.99489 * 180.30553 * 9 8 7 11 11 C 1.40233 * 120.00202 * 0.30809 * 9 8 7 12 12 N 1.30691 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47121 * 59.99806 * 13 11 9 15 15 H 1.48503 * 109.47178 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47451 * 299.99782 * 13 11 9 17 17 H 1.09003 * 109.46876 * 60.00272 * 1 2 3 18 18 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46969 * 300.00335 * 1 2 3 20 20 H 1.09007 * 109.47398 * 60.00088 * 3 2 1 21 21 H 1.08999 * 109.47161 * 299.99848 * 3 2 1 22 22 H 1.08008 * 126.40257 * 359.94819 * 5 4 3 23 23 H 1.08002 * 125.68842 * 179.97438 * 6 5 4 24 24 H 0.96993 * 120.00262 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4706 1.1897 0.0006 5 6 4.1941 0.0332 0.0006 6 6 5.5109 0.3819 0.0007 7 7 5.5986 1.7065 0.0067 8 6 4.3746 2.2264 0.0009 9 6 4.0609 3.5908 0.0010 10 1 3.0284 3.9074 0.0009 11 6 5.0874 4.5463 0.0012 12 7 6.3368 4.1631 0.0017 13 14 4.6687 6.3667 0.0006 14 1 3.8750 6.6925 1.2127 15 1 5.9222 7.1629 0.0015 16 1 3.8761 6.6921 -1.2122 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6886 1.8464 0.8900 21 1 1.6886 1.8463 -0.8900 22 1 3.7971 -0.9712 0.0010 23 1 6.3445 -0.3048 0.0012 24 1 7.0468 4.8240 0.0022 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223127814.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 19.639619 kcal Electronic energy + Delta-G solvation = -10748.142873 eV Core-core repulsion = 8663.235207 eV Total energy + Delta-G solvation = -2084.907666 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.82475 -37.40646 -33.28676 -31.64635 -28.58219 -26.81899 -25.09958 -24.20131 -19.82588 -19.27046 -17.06820 -15.91221 -15.83286 -15.58390 -14.70612 -13.69047 -13.49487 -12.67059 -12.42510 -11.85927 -11.75701 -11.25090 -11.11082 -11.06701 -10.42325 -10.16620 -9.69558 -9.17046 -7.89452 -7.75963 -6.99051 -6.36025 -4.23984 3.08515 3.16807 3.18188 3.58101 3.73631 4.07520 4.69442 4.78149 5.35057 5.36502 5.57458 5.60738 5.65452 5.89878 6.45838 6.63175 7.05848 7.23639 7.34539 7.63836 8.21623 8.26564 8.63313 9.00192 9.34167 10.29139 10.57620 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.013632 C = 0.010643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.290691 B = 2053.475497 C = 2630.319088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.398 6.398 3 C 0.311 3.689 4 N -0.512 5.512 5 C -0.153 4.153 6 C -0.025 4.025 7 N -0.514 5.514 8 C 0.376 3.624 9 C -0.467 4.467 10 H 0.075 0.925 11 C 0.082 3.918 12 N -0.743 5.743 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 H 0.042 0.958 18 H 0.087 0.913 19 H 0.042 0.958 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.138 0.862 23 H 0.135 0.865 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -1.649 -0.016 8.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.316 6.316 3 C 0.148 3.852 4 N -0.206 5.206 5 C -0.283 4.283 6 C -0.177 4.177 7 N -0.235 5.235 8 C 0.134 3.866 9 C -0.506 4.506 10 H 0.093 0.907 11 C -0.141 4.141 12 N -0.368 5.368 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.193 1.193 17 H 0.061 0.939 18 H 0.105 0.895 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.156 0.844 23 H 0.152 0.848 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.862 -1.377 -0.007 7.982 hybrid contribution -1.225 0.410 -0.004 1.292 sum -9.087 -0.967 -0.011 9.138 Atomic orbital electron populations 1.22646 0.80136 1.02719 1.00125 1.87774 1.19958 1.28457 1.95442 1.21880 0.80226 0.83315 0.99763 1.45539 1.03412 1.07860 1.63739 1.21828 0.92474 0.89980 1.23970 1.22138 0.93547 0.94456 1.07525 1.71269 1.19111 1.04964 1.28131 1.20303 0.81468 0.88572 0.96261 1.18040 0.94021 0.86873 1.51696 0.90703 1.25674 0.94422 1.00442 0.93589 1.70004 0.99493 1.35081 1.32202 0.86356 0.78572 0.82055 0.79442 1.19275 1.20326 1.19270 0.93912 0.89493 0.93919 0.92669 0.92663 0.84403 0.84760 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.01 101.05 1.11 1.62 14 2 O -0.40 -7.30 9.94 -35.23 -0.35 -7.65 14 3 C 0.31 6.34 6.89 59.85 0.41 6.75 14 4 N -0.51 -13.15 3.21 -121.19 -0.39 -13.54 14 5 C -0.15 -3.86 10.97 -16.24 -0.18 -4.04 14 6 C -0.03 -0.68 11.85 -17.88 -0.21 -0.89 14 7 N -0.51 -15.62 9.41 -12.72 -0.12 -15.74 14 8 C 0.38 10.95 7.43 -155.59 -1.16 9.80 14 9 C -0.47 -12.98 9.07 -38.17 -0.35 -13.33 14 10 H 0.07 1.89 7.65 -52.49 -0.40 1.49 14 11 C 0.08 2.21 5.50 -17.29 -0.10 2.11 14 12 N -0.74 -21.25 11.90 55.56 0.66 -20.59 14 13 Si 0.91 19.34 29.56 -169.99 -5.03 14.31 14 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 15 H -0.28 -5.78 7.11 56.52 0.40 -5.37 14 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 17 H 0.04 0.47 8.14 -51.93 -0.42 0.04 14 18 H 0.09 0.89 8.14 -51.93 -0.42 0.46 14 19 H 0.04 0.47 8.14 -51.93 -0.42 0.04 14 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 22 H 0.14 3.12 7.85 -52.48 -0.41 2.71 14 23 H 0.13 3.16 8.06 -52.49 -0.42 2.73 14 24 H 0.27 7.07 8.29 -40.82 -0.34 6.73 14 LS Contribution 220.61 15.07 3.32 3.32 Total: -1.00 -33.17 220.61 -4.85 -38.02 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.48 Total: -0.17 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.46 Total: 2.03 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.15 Total: -49.87 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.35 Total: -7.65 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -33.17 -4.85 -38.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223127814.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.657 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds