Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99830 * 2 1 4 4 N 1.46499 * 109.46825 * 179.97438 * 3 2 1 5 5 C 1.36418 * 126.55823 * 0.02562 * 4 3 2 6 6 C 1.36219 * 107.19767 * 179.97438 * 5 4 3 7 7 N 1.32756 * 108.61652 * 0.26917 * 6 5 4 8 8 C 1.32987 * 109.22682 * 359.56246 * 7 6 5 9 9 C 1.39994 * 125.96158 * 180.17102 * 8 7 6 10 10 H 1.08001 * 119.99489 * 180.30553 * 9 8 7 11 11 C 1.40233 * 120.00202 * 0.30809 * 9 8 7 12 12 N 1.30691 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47121 * 59.99806 * 13 11 9 15 15 H 1.48503 * 109.47178 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47451 * 299.99782 * 13 11 9 17 17 H 1.09003 * 109.46876 * 60.00272 * 1 2 3 18 18 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46969 * 300.00335 * 1 2 3 20 20 H 1.09007 * 109.47398 * 60.00088 * 3 2 1 21 21 H 1.08999 * 109.47161 * 299.99848 * 3 2 1 22 22 H 1.08008 * 126.40257 * 359.94819 * 5 4 3 23 23 H 1.08002 * 125.68842 * 179.97438 * 6 5 4 24 24 H 0.96993 * 120.00262 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4706 1.1897 0.0006 5 6 4.1941 0.0332 0.0006 6 6 5.5109 0.3819 0.0007 7 7 5.5986 1.7065 0.0067 8 6 4.3746 2.2264 0.0009 9 6 4.0609 3.5908 0.0010 10 1 3.0284 3.9074 0.0009 11 6 5.0874 4.5463 0.0012 12 7 6.3368 4.1631 0.0017 13 14 4.6687 6.3667 0.0006 14 1 3.8750 6.6925 1.2127 15 1 5.9222 7.1629 0.0015 16 1 3.8761 6.6921 -1.2122 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6886 1.8464 0.8900 21 1 1.6886 1.8463 -0.8900 22 1 3.7971 -0.9712 0.0010 23 1 6.3445 -0.3048 0.0012 24 1 7.0468 4.8240 0.0022 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223127814.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = -3.997396 kcal Electronic energy + Delta-G solvation = -10749.167851 eV Core-core repulsion = 8663.235207 eV Total energy + Delta-G solvation = -2085.932644 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.81189 -38.80387 -35.29177 -33.52202 -30.63288 -28.09002 -26.98681 -25.87566 -21.86410 -21.20280 -18.94952 -17.70496 -17.26225 -17.17095 -16.42805 -15.16870 -15.13270 -14.46310 -14.36461 -13.52237 -13.40071 -13.02768 -12.77826 -12.42992 -12.32834 -11.92391 -11.13600 -10.99900 -9.88595 -9.86584 -9.06417 -8.33863 -6.32588 1.38734 1.45238 1.59437 1.81192 2.04496 2.32778 2.74813 3.08943 3.58151 3.99930 4.22869 4.44085 4.51969 4.56072 4.71440 4.78248 5.15726 5.33646 5.62952 5.66466 6.22878 6.38327 6.63907 6.97817 7.31559 8.23476 8.62748 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.013632 C = 0.010643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.290691 B = 2053.475497 C = 2630.319088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.418 6.418 3 C 0.310 3.690 4 N -0.518 5.518 5 C -0.137 4.137 6 C -0.059 4.059 7 N -0.561 5.561 8 C 0.343 3.657 9 C -0.493 4.493 10 H 0.092 0.908 11 C 0.030 3.970 12 N -0.793 5.793 13 Si 0.999 3.001 14 H -0.256 1.256 15 H -0.273 1.273 16 H -0.256 1.256 17 H 0.057 0.943 18 H 0.110 0.890 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.166 0.834 23 H 0.155 0.845 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -1.045 -0.019 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.337 6.337 3 C 0.148 3.852 4 N -0.211 5.211 5 C -0.268 4.268 6 C -0.209 4.209 7 N -0.283 5.283 8 C 0.100 3.900 9 C -0.533 4.533 10 H 0.111 0.889 11 C -0.189 4.189 12 N -0.418 5.418 13 Si 0.818 3.182 14 H -0.180 1.180 15 H -0.198 1.198 16 H -0.180 1.180 17 H 0.076 0.924 18 H 0.129 0.871 19 H 0.076 0.924 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.183 0.817 23 H 0.173 0.827 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.828 -0.809 -0.011 9.861 hybrid contribution -0.721 0.062 -0.003 0.724 sum -10.549 -0.747 -0.013 10.576 Atomic orbital electron populations 1.23012 0.76944 1.04830 1.01620 1.87740 1.23257 1.27051 1.95675 1.22006 0.77588 0.84775 1.00849 1.45783 1.05634 1.07101 1.62536 1.22261 0.92097 0.91074 1.21335 1.22610 0.95293 0.93975 1.09001 1.71168 1.20964 1.06730 1.29438 1.20668 0.82131 0.89812 0.97430 1.18557 0.95333 0.87019 1.52372 0.88946 1.26838 0.93846 1.06007 0.92221 1.70155 1.00973 1.37299 1.33402 0.85038 0.78542 0.74515 0.80085 1.18049 1.19806 1.18032 0.92395 0.87123 0.92407 0.91497 0.91479 0.81701 0.82736 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 14 2 O -0.42 -14.30 9.94 -148.98 -1.48 -15.78 14 3 C 0.31 12.08 6.89 127.77 0.88 12.96 14 4 N -0.52 -26.35 3.21 -637.79 -2.05 -28.40 14 5 C -0.14 -6.83 10.97 83.51 0.92 -5.91 14 6 C -0.06 -3.18 11.85 84.08 1.00 -2.19 14 7 N -0.56 -34.93 9.41 -194.17 -1.83 -36.76 14 8 C 0.34 20.22 7.43 133.59 0.99 21.22 14 9 C -0.49 -27.50 9.07 23.18 0.21 -27.29 14 10 H 0.09 4.59 7.65 -2.91 -0.02 4.57 14 11 C 0.03 1.61 5.50 85.35 0.47 2.08 14 12 N -0.79 -46.25 11.90 21.88 0.26 -45.99 14 13 Si 1.00 39.20 29.56 68.60 2.03 41.23 14 14 H -0.26 -9.50 7.11 99.48 0.71 -8.80 14 15 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 16 H -0.26 -9.49 7.11 99.48 0.71 -8.79 14 17 H 0.06 1.08 8.14 -2.39 -0.02 1.06 14 18 H 0.11 1.86 8.14 -2.39 -0.02 1.84 14 19 H 0.06 1.08 8.14 -2.39 -0.02 1.06 14 20 H 0.07 2.44 8.14 -2.38 -0.02 2.42 14 21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 14 22 H 0.17 7.15 7.85 -2.91 -0.02 7.13 14 23 H 0.16 7.35 8.06 -2.91 -0.02 7.32 14 24 H 0.28 14.69 8.29 -92.71 -0.77 13.92 14 Total: -1.00 -72.24 220.61 3.83 -68.41 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.19 Total: 14.49 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.71 Total: 2.80 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -3.61 Total: -111.14 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.48 Total: -15.78 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -72.24 3.83 -68.41 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223127814.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.409 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds