Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46537 * 2 1 4 4 C 1.50699 * 109.46888 * 120.00273 * 2 1 3 5 5 H 1.08002 * 119.99535 * 114.49847 * 4 2 1 6 6 C 1.37872 * 119.99987 * 294.48853 * 4 2 1 7 7 N 1.31517 * 120.00053 * 164.73369 * 6 4 2 8 8 Si 1.86799 * 120.00279 * 344.73116 * 6 4 2 9 9 H 1.48502 * 109.47136 * 269.99868 * 8 6 4 10 10 H 1.48495 * 109.47278 * 30.00006 * 8 6 4 11 11 H 1.48504 * 109.47338 * 150.00163 * 8 6 4 12 12 N 1.46502 * 109.46855 * 240.00514 * 2 1 3 13 13 C 1.38688 * 125.98379 * 119.99769 * 12 2 1 14 14 C 1.32864 * 107.91757 * 179.97438 * 13 12 2 15 15 N 1.38699 * 107.91018 * 0.02562 * 14 13 12 16 16 H 0.97001 * 125.98143 * 179.97438 * 15 14 13 17 17 C 1.34756 * 125.97999 * 299.68876 * 12 2 1 18 18 O 1.21794 * 125.95140 * 0.02562 * 17 12 2 19 19 H 1.08999 * 109.47386 * 53.81898 * 1 2 3 20 20 H 1.09000 * 109.47023 * 173.81880 * 1 2 3 21 21 H 1.08998 * 109.47004 * 293.81304 * 1 2 3 22 22 H 0.97003 * 119.99552 * 354.89567 * 7 6 4 23 23 H 1.08005 * 126.04475 * 0.02562 * 13 12 2 24 24 H 1.07988 * 126.04708 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5780 -1.6375 1.1337 6 6 1.7955 -0.1770 2.4795 7 7 1.9570 -0.9193 3.5531 8 14 1.2451 1.6002 2.6471 9 1 2.4366 2.4778 2.7714 10 1 0.4649 1.9922 1.4459 11 1 0.3963 1.7436 3.8572 12 7 2.0183 -0.6905 -1.1963 13 6 2.8189 -0.1394 -2.1856 14 6 3.0462 -1.0783 -3.0978 15 7 2.3909 -2.2323 -2.6945 16 1 2.3823 -3.0782 -3.1691 17 6 1.7730 -1.9741 -1.5250 18 8 1.1060 -2.7627 -0.8795 19 1 -0.3634 0.6067 -0.8295 20 1 -0.3633 -1.0217 -0.1107 21 1 -0.3633 0.4149 0.9402 22 1 2.1706 -1.8613 3.4637 23 1 3.1925 0.8737 -2.2098 24 1 3.6360 -0.9630 -3.9950 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231930573.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = -13.292283 kcal Electronic energy + Delta-G solvation = -11095.213705 eV Core-core repulsion = 9008.878005 eV Total energy + Delta-G solvation = -2086.335700 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.94769 -37.66455 -36.94469 -34.37538 -31.82944 -29.25805 -26.91905 -24.36714 -22.65113 -21.04169 -19.57511 -19.10676 -16.91392 -16.53625 -16.03346 -15.52011 -15.28516 -14.65883 -14.27823 -14.08604 -13.52116 -13.26673 -12.69327 -12.47505 -12.20124 -11.46298 -11.43246 -11.15999 -10.78093 -10.53546 -8.89305 -8.47982 -6.46168 1.49365 1.56842 1.60802 1.69837 1.79621 2.09814 2.51516 2.99786 3.04419 4.21338 4.45790 4.58145 4.63589 4.74501 4.81548 4.96701 5.12571 5.45793 5.74625 5.80422 5.94622 6.25823 6.48151 6.82296 7.32507 7.59229 8.53762 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.059016 B = 0.015044 C = 0.013855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.331931 B = 1860.809405 C = 2020.379147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.258 3.742 3 H 0.082 0.918 4 C -0.608 4.608 5 H -0.001 1.001 6 C -0.022 4.022 7 N -0.934 5.934 8 Si 1.090 2.910 9 H -0.260 1.260 10 H -0.224 1.224 11 H -0.287 1.287 12 N -0.520 5.520 13 C -0.031 4.031 14 C -0.016 4.016 15 N -0.635 5.635 16 H 0.436 0.564 17 C 0.616 3.384 18 O -0.635 6.635 19 H 0.065 0.935 20 H 0.027 0.973 21 H 0.065 0.935 22 H 0.246 0.754 23 H 0.212 0.788 24 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 7.265 -15.027 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.156 3.844 3 H 0.099 0.901 4 C -0.646 4.646 5 H 0.017 0.983 6 C -0.220 4.220 7 N -0.569 5.569 8 Si 0.907 3.093 9 H -0.185 1.185 10 H -0.147 1.147 11 H -0.213 1.213 12 N -0.238 5.238 13 C -0.154 4.154 14 C -0.139 4.139 15 N -0.278 5.278 16 H 0.278 0.722 17 C 0.317 3.683 18 O -0.518 6.518 19 H 0.084 0.916 20 H 0.047 0.953 21 H 0.083 0.917 22 H 0.055 0.945 23 H 0.228 0.772 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.143 8.028 -13.365 15.633 hybrid contribution 0.524 -2.636 -0.703 2.777 sum 1.667 5.393 -14.067 15.158 Atomic orbital electron populations 1.22398 0.97058 1.00460 1.01522 1.19181 0.91874 0.93144 0.80239 0.90055 1.22272 1.39728 1.08991 0.93622 0.98279 1.27621 0.93359 1.10031 0.90942 1.70928 1.46536 1.07416 1.31990 0.83646 0.78309 0.69251 0.78085 1.18452 1.14742 1.21266 1.45785 1.45405 1.10647 1.21938 1.22682 1.00755 1.02514 0.89462 1.22491 1.04395 0.83618 1.03444 1.43227 1.47893 1.15540 1.21189 0.72235 1.16740 0.84521 0.83721 0.83356 1.90942 1.48840 1.52853 1.59214 0.91577 0.95349 0.91653 0.94524 0.77159 0.74934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.09 8.59 71.98 0.62 -6.47 14 2 C 0.26 12.30 2.44 44.25 0.11 12.40 14 3 H 0.08 3.35 6.71 -2.39 -0.02 3.33 14 4 C -0.61 -36.77 8.54 25.60 0.22 -36.55 14 5 H 0.00 -0.09 7.89 -2.91 -0.02 -0.11 14 6 C -0.02 -1.34 5.33 84.65 0.45 -0.89 14 7 N -0.93 -61.35 13.70 21.45 0.29 -61.05 14 8 Si 1.09 47.45 26.17 68.60 1.80 49.25 14 9 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 10 H -0.22 -8.08 5.53 99.48 0.55 -7.53 14 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 14 12 N -0.52 -22.50 2.64 -637.52 -1.68 -24.19 14 13 C -0.03 -0.90 11.45 82.43 0.94 0.04 14 14 C -0.02 -0.38 11.95 82.43 0.98 0.61 14 15 N -0.63 -20.24 6.15 -323.82 -1.99 -22.23 14 16 H 0.44 11.01 8.96 -92.71 -0.83 10.18 14 17 C 0.62 28.85 8.17 179.07 1.46 30.31 14 18 O -0.64 -37.13 16.44 -4.65 -0.08 -37.20 14 19 H 0.07 2.44 8.14 -2.39 -0.02 2.42 14 20 H 0.03 1.45 6.84 -2.39 -0.02 1.44 14 21 H 0.06 2.89 5.06 -2.39 -0.01 2.87 14 22 H 0.25 16.95 8.73 -92.71 -0.81 16.14 14 23 H 0.21 4.16 8.06 -2.91 -0.02 4.14 14 24 H 0.23 2.45 8.06 -2.92 -0.02 2.42 14 Total: -1.00 -85.58 209.77 3.31 -82.27 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.19 Total: 13.71 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.79 Total: -0.54 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.38 Total: -107.47 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.08 Total: -37.20 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.80 Total: 49.25 kcal Total: -85.58 3.31 -82.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231930573.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.975 kcal (2) G-P(sol) polarization free energy of solvation -85.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds